Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02575 ATGGACAAATTCTTCTTTGTTTCTATACTAGCTTTGCTCATAGCAGCTGATGGAGTTGCAGGAAGCATGATGTGTGACAACATTGGCATGCTTGAAGAACTTAAAAGCCTGGAGTCTTTAGACATAGAAGAAGAAGCAGAGGTAGAACTTTCTGACATCTCTTCATTGAGAAGCGAGCACGGTGGAAAAGTTCTTGTTAATATTGATAGCTTTGGTGCTGCTGGTGACGGAGAATCTGATGATACTGAGGCTTTGCAAAAAGCATGGGGAGTTGCATGCTCTACACCAAAATCTGTTTTGTTGATTCCTCAAGGTCGCCGTTACCTAGTTAATGCAACAAGATTCAGAGGGCCTTGTGCAGACAATCTCATCATTCAGATTGATGGTACATTGGTTGCCCCAGATGAGCCTAAGAACTGGGATCCAAATCTGCCACGGGTTTGGCTTGATTTTTCCAAATTGAATAAAGCTGTTTTCCAAGGTTCTGGAGTTATTGATGGCTCAGGAAGTAAATGGTGGGCAGCATCTTGCAAAAAGAACAAGTCAAATCCTTGCAAAGGTGCACCAACAGCATTTACGATTGACACAAGTACATCCATAAGGGTGAAAGGACTGACAATCCAGAATAGCCAACAGATGCATTTTACAATATCACGATGTGATTCTGTTAGAATTAATGGAGTTAAAGTGTCAGCACCTGGAGACAGTCCAAACACTGACGGAATCCATATTAGTGAATCAACAAATGTCATAATCCAAGACAGCAAAATCGGAACAGGTGATGATTGCATATCAATTGTCAATGCTAGCTCTAATATCAAAATGAAGAGAATTTATTGTGGACCAGGACATGGAATCAGCATAGGAAGTCTTGGCAAAGACAACTCAACTGGCATCGTCTCGAAAGTGATTTTGGATACAGCAGTTCTCAGGGAGACTACCAATGGTCTCAGAATTAAGACTTGGCAGGGAGGTTCCGGATATGTTCGAGGGGTGCGTTTCCAGAATGTGAGAGTGGAGAATGTATCCAACCCCATTATCATAGACCAATTTTACTGTGATTCACCATCTAGTTGTCAGAACCAGACATCAGCTGTGGAGATAAGCGAGGTGATGTACCAGAACATTAGTGGCACTACAATTAGTGCTAAGGCCATTAAATTTGACTGCAGTGACACAAGCCCATGCAGCAAACTAGTCCTTAGCAACGTGGACTTAGATAAACAAGATGGCACGGTTGAAACATATTGCCACTCAGCTCAAGGTTTTCCCTATGGGGTGGTGCACCCTTCTGCTGATTGCCTTAGTTCCACCGACAAAATCTCTCAAGTTGCAGAATCAACTATGGTGGAGGATATTCGTCACACTGAACTATAA 1377 0.4248 MDKFFFVSILALLIAADGVAGSMMCDNIGMLEELKSLESLDIEEEAEVELSDISSLRSEHGGKVLVNIDSFGAAGDGESDDTEALQKAWGVACSTPKSVLLIPQGRRYLVNATRFRGPCADNLIIQIDGTLVAPDEPKNWDPNLPRVWLDFSKLNKAVFQGSGVIDGSGSKWWAASCKKNKSNPCKGAPTAFTIDTSTSIRVKGLTIQNSQQMHFTISRCDSVRINGVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVSKVILDTAVLRETTNGLRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPSSCQNQTSAVEISEVMYQNISGTTISAKAIKFDCSDTSPCSKLVLSNVDLDKQDGTVETYCHSAQGFPYGVVHPSADCLSSTDKISQVAESTMVEDIRHTEL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02575 458 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
Spst3g02575 458 SMART pbh1 270 290 IPR006626 -
Spst3g02575 458 SMART pbh1 329 350 IPR006626 -
Spst3g02575 458 SMART pbh1 247 268 IPR006626 -
Spst3g02575 458 SMART pbh1 220 246 IPR006626 -
Spst3g02575 458 SUPERFAMILY Pectin lyase-like 64 437 IPR011050 -
Spst3g02575 458 Gene3D - 53 457 IPR012334 -
Spst3g02575 458 FunFam Pectin lyase-like superfamily protein 54 438 - -
Spst3g02575 458 Pfam Glycosyl hydrolases family 28 97 417 IPR000743 GO:0004650|GO:0005975
Spst3g02575 458 PANTHER - 63 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02575 Spst-Chr3 73981775 73984899 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02575 1 451 Glycoside Hydrolase AT1G70500 64.192 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02575 - - gmx:100804067 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02575 3 73981775 73984899 Spst3g02575 3 73981775 73984899 ECH