Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02571 ATGGGGTTGACATTCACCAAGCTTTTCAGTCGGCTTTTTGCCAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGCCGCTGGTAAGACCACCATCCTGTACAAGCTCAAACTTGGAGAGATCGTTACCACTATTCCTACCATTGGGTTCAATGTGGAAACTGTGGAGTACAAGAATATTAGCTTCACTGTTTGGGATGTTGGTGGCCAAGACAAGATTCGCCCTTTGTGGAGGCACTACTTCCAAAACACACAGGGTCTGATATTTGTTGTTGACAGTAATGACAGGGACAGAGTTGTTGAGGCAAGAGATGAGTTGCACAGGATGTTGAACGAGGATGAACTGAGAGATGCAGTATTGCTTGTATTTGCTAACAAACAAGATCTCCCCAATGCAATGAATGCTGCTGAAATTACTGACAAGCTGGGTCTTCACTCTCTCAGACAGCGCCACTGGTACATCCAGAGCACCTGTGCAACCTCTGGGGAGGGTCTTTATGAGGGTTTGGACTGGCTTTCCAACAACATAGCCAACAAGGTAGCTACTGATTTCTTTTTTGCTTCTTTCATGATTAGCATTGGGCAATATTATTAA 597 0.4456 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVATDFFFASFMISIGQYY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02571 198 NCBIfam small GTP-binding protein domain 16 157 IPR005225 GO:0005525
Spst3g02571 198 SMART arf_sub_2 1 181 - -
Spst3g02571 198 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Spst3g02571 198 SMART rab_sub_5 18 184 - -
Spst3g02571 198 Gene3D - 4 185 IPR027417 -
Spst3g02571 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 180 IPR027417 -
Spst3g02571 198 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Spst3g02571 198 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 176 IPR024156 GO:0005525
Spst3g02571 198 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Spst3g02571 198 FunFam ADP-ribosylation factor 1 1 181 - -
Spst3g02571 198 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Spst3g02571 198 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Spst3g02571 198 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Spst3g02571 198 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Spst3g02571 198 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02571 Spst-Chr3 73942503 73945027 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02571 K07937 - mof:131154824 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02571 3 73942503 73945027 Spst3g02571 3 73942503 73945027 ECH
Spst3g02571 3 73942503 73945027 Spst3g02571 3 73942503 73945027 PCT