Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02547 ATGAAGAATGAAACGTTGGATTGGATGAGTTTGAGCATGAGGCGCGTGATGGCTGCAGGAGCTGTTGCGAATTCCACTCTTCTCCTATCTTCTAAACCCAATCAATTGGTTTTCCCCTTCTCCTTCTCCGTAACCAGAACGTCGCCGTTTCTCATTTCCCTTCTCACTCCTCGCCAGCGCCGTTTCCTTTCTGTTTCTTCTTTAGCTGCTGACCACCACGACCTCTCTGATTTCGGAGATGTTGACAACGTTGGAATTTCAAGCAAAGGTTACAAGATGCTTCTCAAAGGGATGACTTACCCCGATCTTGAAAAATGGGTTCGCTCACATGGATACAGGCCTGGGCAGGCTGTAATGTTATGGAAGCGAATGTATGGAAACAACATTTGGGCCCACCATGTTGATGAGTTGGAAGGATTGAATAAAGATTTCAAGAAAATGTTGAATGAAAATGCCAAGTTAAAGGCACTTGCTCTTAAAGAAATTCGCACAGCATCTGATGGAACAAGAAAGATTTTATTCACGTTGGATGATGGGCTAGTCATAGAAACAGTCGTCATACCTTGTGACAGAGGTAGGACTACTGTATGCGTTTCAAGTCAAGTTGGATGTGCCATGAATTGCCAATTTTGCTACACTGGAAGAATGGGTCTTAGGAGACATCTTACTGCCGCAGAAATAGCGGAGCAGGTGGTTTTTGCCAGACGCTTGCTCACAGATGAAGTTGGTCCCATCACAAATGTTGTCTTTATGGGCATGGGGGAACCACTTCATAACATCGATAATGTCATTAAAGCTGCAAATATAATGGTAGATGAGCAAGGGCTTCACTTCAGCCCTCGCAAGGTCACCATTTCAACCAGTGGGCTTGTTCCACAGCTCAAACGTTTTCTCCATGAATCAAACTGTGCATTAGCTGTTAGTTTGAATGCAACTACTGACGAGGTAAGAAACTGGATCATGCCTATAAATCGAAAGTATAAGCTAGATTTGCTTCTTCAGACACTTCGAGAGGAGCTTCGCTTCAAAAACAACTTCAAAGTTCTATTTGAGTATGTGATGCTTGAAGGAATTAATGACAGTGATGGAGATGCAGAGAGACTTGTCGAGCTTGTGAAGGGCATTCCTTGCAAGGTTAATCTAATCTCATTCAATCCTCACAGTGGATCATTCTTCAGACCAACCAAAGAGGAAAGGATGATTGAATTCCGTAATATGTTGGCTGGGGCAGGATTGACAGTCTTTTTAAGACTTAGTAGAGGTGATGATCAAATGGCTGCCTGCGGTCAATTGGGTAAGCCTGGCACCATTCAAGCTCCATTGCTTCGTGTACCTGAGCAATTTCAAATGGCGATTGGAAGTTCAGCTTGA 1371 0.4369 MKNETLDWMSLSMRRVMAAGAVANSTLLLSSKPNQLVFPFSFSVTRTSPFLISLLTPRQRRFLSVSSLAADHHDLSDFGDVDNVGISSKGYKMLLKGMTYPDLEKWVRSHGYRPGQAVMLWKRMYGNNIWAHHVDELEGLNKDFKKMLNENAKLKALALKEIRTASDGTRKILFTLDDGLVIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLRRHLTAAEIAEQVVFARRLLTDEVGPITNVVFMGMGEPLHNIDNVIKAANIMVDEQGLHFSPRKVTISTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLDLLLQTLREELRFKNNFKVLFEYVMLEGINDSDGDAERLVELVKGIPCKVNLISFNPHSGSFFRPTKEERMIEFRNMLAGAGLTVFLRLSRGDDQMAACGQLGKPGTIQAPLLRVPEQFQMAIGSSA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02547 456 Coils Coil 137 157 - -
Spst3g02547 456 Gene3D Aldolase class I 157 437 IPR013785 -
Spst3g02547 456 CDD Radical_SAM 203 403 - -
Spst3g02547 456 NCBIfam 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 92 432 IPR027492 GO:0030488|GO:0070475
Spst3g02547 456 SFLD adenosine C2 methyltransferase (RlmN-like) 92 433 IPR004383 GO:0006364|GO:0008173
Spst3g02547 456 SUPERFAMILY Radical SAM enzymes 192 410 - -
Spst3g02547 456 PANTHER 23S RRNA METHYLTRANSFERASE 65 438 IPR040072 -
Spst3g02547 456 Pfam Radical SAM superfamily 199 362 IPR007197 GO:0003824|GO:0051536
Spst3g02547 456 Pfam 4Fe-4S single cluster domain 203 306 - -
Spst3g02547 456 Gene3D - 92 155 - -
Spst3g02547 456 Hamap Dual-specificity RNA methyltransferase RlmN [rlmN]. 92 437 IPR027492 GO:0030488|GO:0070475
Spst3g02547 456 SFLD methyltransferase (Class A) 92 433 - -
Spst3g02547 456 ProSiteProfiles Radical SAM core domain profile. 190 423 IPR007197 GO:0003824|GO:0051536
Spst3g02547 456 FunFam Radical SAM superfamily protein 92 155 - -
Spst3g02547 456 FunFam Dual-specificity RNA methyltransferase RlmN 157 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02547 Spst-Chr3 73633745 73638952 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02547 K06941 K22544 gmx:100813692 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02547 3 73633745 73638952 Spst3g02547 3 73633745 73638952 ECH