Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02544 ATGACATGTTTTCTCTTCACACGTCCACAAAACATGGCACTTTGGCAACAAAAACTAGGCTTCTCATATCTACTAATCCTTTGCTTAGCCACTGTGGTTTCTTCACACAACAGGCCTTTTACAACTCCAAGTGTCACACGCTTGACAGATTCTTTTCCTCGTGTCCCAGTTGATCAAGCTTTTTCTAAGGCTTTTGGGGCCTCCAATATCCAGTTTCTCAGTAATGGGTCCACGGCCACACTGGCTCTTGACAAAATCTCAGGCTCCGGCTTGGTATCACAAAGCAGATATTACTATGGATTCTTCAGTGCTGCAATCAAATTACCCTCTGGTTTGTCACCTGGAGTTGTTGTTGCTTTTTATTTATCAAATGCAGATAAATTCCCTCACAACCATGATGAAATAGATATTGAAATTCTGGGTCATGATAAGAGAAATGACTGGGTTATTCAAACAAATGTCTATGCCAATGGAAGTGTCAGCACGGGGAGAGAAGAGAAATTCTATTTCTGGTTCGACCCGACACAGCAGTATCATCATTACAGCATCTTGTGGAACAGTTATCACACAGTGTTCTTAGTGGACAATATTCCAGTGAGGGAATTCATACATAGCAGAACATATCCTTCTATTTATCCATCAAAACCAATGTCAGTGTATGCCACAATATGGGATGGTTCAGAATGGGCTACTCATGGAGGCAAATACCCAGTTAACTACAAGTATGCACCATTTGTTGTATCATTTGCACAAATAGAACTAAGTGGTTGCATATCTGATCCCACAGCACCAGTTTCTTCATGCTCTAAGGTCAATCCTTCTGGCCTAGACCCAGTCAATGGACCAGAGTTTACTAAGTTATCACAGCAGCAAATAGCAGCCATGGATTGGGCAAGAAGAAAACTCATGTTTTACTCTTACTGCAATGACAGACCCAGATTCAAGGTCATGCCACCAGAATGCCTCTGA 969 0.418 MTCFLFTRPQNMALWQQKLGFSYLLILCLATVVSSHNRPFTTPSVTRLTDSFPRVPVDQAFSKAFGASNIQFLSNGSTATLALDKISGSGLVSQSRYYYGFFSAAIKLPSGLSPGVVVAFYLSNADKFPHNHDEIDIEILGHDKRNDWVIQTNVYANGSVSTGREEKFYFWFDPTQQYHHYSILWNSYHTVFLVDNIPVREFIHSRTYPSIYPSKPMSVYATIWDGSEWATHGGKYPVNYKYAPFVVSFAQIELSGCISDPTAPVSSCSKVNPSGLDPVNGPEFTKLSQQQIAAMDWARRKLMFYSYCNDRPRFKVMPPECL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02544 322 Pfam Glycosyl hydrolases family 16 61 241 IPR000757 GO:0004553|GO:0005975
Spst3g02544 322 Gene3D - 41 321 - -
Spst3g02544 322 PIRSF EndGlu_transf 19 322 IPR016455 GO:0010411|GO:0016762|GO:0042546
Spst3g02544 322 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 50 249 IPR000757 GO:0004553|GO:0005975
Spst3g02544 322 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 285 321 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Spst3g02544 322 SUPERFAMILY Concanavalin A-like lectins/glucanases 60 321 IPR013320 -
Spst3g02544 322 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 57 321 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02544 Spst-Chr3 73564560 73566022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02544 14 321 Glycoside Hydrolase AT1G10550 63.462 1.95e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02544 K08235 - gmx:100778993 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02544 3 73564560 73566022 Spst3g02544 3 73564560 73566022 ECH