Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02542 ATGGCGGATGAGAGCGTTGTTGAGTCCCCAGTGAAGAGGCAAAGAGATGACGAAGAAAATGGGGCCTCTGTTTCCATGGATACGGAAGGTGGCAAAGAACCACAGGGTAATGGTTTGTCGTCGGTGATTCCTGGATGGTTCTCTGAAATCAGTTCAATGTGGCCTGGAGAGGCTCACTCCTTAATGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGAATACCAGAATGTCATGGTCTTTCAGTCGTCAACATATGGCAAGGTTCTTGTTTTGGATGGAGTAATTCAATTAACAGAAAGGGATGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATTCCAAACCCCAAAAAGGTTCTGGTTATCGGAGGAGGTGACGGAGGAGTCCTGCGAGAAATAGCTCGCCATTCTTCAGTTGAAAAGATAGACATTTGTGAAATTGACAGTATGGTTGTTGATGTCTCCAAACAATATTTCCCTGATGTAGCAATAGGGTATGAGGATCCTCGTGTGACACTTACTGTTGGTGATGGAGTTGCGTTTCTGAAAAATGTTCCAGAAGGAACTTACGATGCTGTTATAGTGGATTCATCCGACCCTATTGGTCCTGCTCAGGAGCTGTTTGAAAAACCCTTCTTTGGGTCAGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGTGTACCCAGGCAGAAAGTATATGGCTTCATATGGATATAATTGAGGACATTGTGGCGAATTGTCGCCAGATTTTTAAAGGATCTGTCAACTATGCTTGGACTACTGTTCCTACATACCCAAGTGGGATGATTGGCTTTATGCTTTGCTCAACTGAGGGACCACCTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAATGAGTGTCAGAAGTCAGCAAGGCCACTGAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTTTGCCATCATTTGCAAAGAGGAAAATTGTTCCTAAAGCAAATTAG 1005 0.4338 MADESVVESPVKRQRDDEENGASVSMDTEGGKEPQGNGLSSVIPGWFSEISSMWPGEAHSLMVEKILFQGKSEYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREIARHSSVEKIDICEIDSMVVDVSKQYFPDVAIGYEDPRVTLTVGDGVAFLKNVPEGTYDAVIVDSSDPIGPAQELFEKPFFGSVAKALRPGGVVCTQAESIWLHMDIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENECQKSARPLKFYNSEIHTAAFCLPSFAKRKIVPKAN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02542 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Spst3g02542 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Spst3g02542 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Spst3g02542 334 PIRSF Spermidine_synth 35 334 IPR030668 GO:0006595
Spst3g02542 334 MobiDBLite consensus disorder prediction 1 22 - -
Spst3g02542 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Spst3g02542 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 327 IPR029063 -
Spst3g02542 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Spst3g02542 334 CDD AdoMet_MTases 122 233 - -
Spst3g02542 334 FunFam Spermidine synthase 1 97 334 - -
Spst3g02542 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
Spst3g02542 334 MobiDBLite consensus disorder prediction 1 38 - -
Spst3g02542 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
Spst3g02542 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 37 329 IPR001045 GO:0003824
Spst3g02542 334 FunFam Spermidine synthase 1 37 96 - -
Spst3g02542 334 NCBIfam spermidine synthase 46 324 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02542 Spst-Chr3 73520763 73524371 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02542 K00797 - gmx:100812978 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02542 3 73520763 73524371 Spst3g02542 3 73520763 73524371 ECH
Spst3g02542 3 73520763 73524371 Spst3g02542 3 73520763 73524371 PCT