Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02504 ATGGACCATCTTAGACTTATTCTCCTACTCTTCCTGTTCATACCCACCTGCTTCTCTTTCACGTTTCAAACTCCTTCAATCAATGAGTTTTCCAATCAAAGTTCTTCTCTGAAGCAGCAGATTCTTGAGCTAGCTAACAGTCCAAGCACGGTGAAATGGATGAAGAGAATAAGGAGGGAAATCCATGAACACCCAGAATTTGCATATGAGGAGTTCAGGACTAGTGCTCTCATCAGGCATGAGCTTGACCAGCTGGGTGTTGCTTACAAGTGGCCTGTGGCGGGGACGGGTGTGGTTGCAAAAATTGGTTCTGGGTCTCCTCCTTTTGTTGCTCTTAGAGCAGACATGGATGCTTTGCCAATTCAGGAATTGGTTGATTGGGACCATAAGAGCAAAGTAGATGGAAAAATGCATGCTTGTGCACACGATGCACATGTTGCCATGTTACTCGGCGCTGCAAAGATATTACAAGAAATGAAAGACATGTTACAAACTACTGTTGTTCTAATATTTCAACCAGCTGAGGAAAAAGGCACAGGTGCAAAAGATATGATCCAAGAAAAAGTGCTTGAAGATGTTGGGGCTATTCTTGGATTGCATTTGGTGTCAGTGTATCCAACTGGTGTTGTTGCATCACGACCAGGAGAATTTTTAGCAGGGTGTGGAAGCTTCACAGCTAAGATCAATGGAAAAGGGGGTTTAGCAGGGGTTCCCCAGCATTGTCTTGACCCAATTTTGGCTGCTTCAACATCAATTATTAGCTTGCAAAACATTGTTTCAAGGGAGGTTGATCCTTTGGATTCTCAGGTGCTTTCTGTGGCCATGATCAATGCAGGGTCTTCTCATGACATCATCCCTCATTCAACTACATTTGGAGGTACTTACAGAGCATTCAGCAAAAAAAGCTTCTATGGACTCAAGAAAAGGATAGAAGAGGTTATTAAAGGCCAGGCAGAAGTACATAGGTGTTTTGCTGAGGTTGAGTTCTTAGGTAATGAACATCCACTAATCCCTCCAACCACAAACGACGAAAGAGTATACGACCTAGCACGCCAAGTCTCTAGTAAGATTGTTGGAGAAGATAATATAAAATTAGCTCCCCTCTTCACTGGGAGTGAAGATTTTGCATTTTACTTGGAAAAAGTACCTGGCACACTCGTTCTTGTGGGTACACGAGATGAGAAGAGTGGATCCATATATTCTGCTCATAGTCCTTTCTTTTCCATTGACGAAGATGTGCTTGCCATTGGGGCCTCAATACATGCAACATTTGCTCTTTCATACCATTCTTATTTAACAAATCCAGATCCTTTCTAA 1317 0.4267 MDHLRLILLLFLFIPTCFSFTFQTPSINEFSNQSSSLKQQILELANSPSTVKWMKRIRREIHEHPEFAYEEFRTSALIRHELDQLGVAYKWPVAGTGVVAKIGSGSPPFVALRADMDALPIQELVDWDHKSKVDGKMHACAHDAHVAMLLGAAKILQEMKDMLQTTVVLIFQPAEEKGTGAKDMIQEKVLEDVGAILGLHLVSVYPTGVVASRPGEFLAGCGSFTAKINGKGGLAGVPQHCLDPILAASTSIISLQNIVSREVDPLDSQVLSVAMINAGSSHDIIPHSTTFGGTYRAFSKKSFYGLKKRIEEVIKGQAEVHRCFAEVEFLGNEHPLIPPTTNDERVYDLARQVSSKIVGEDNIKLAPLFTGSEDFAFYLEKVPGTLVLVGTRDEKSGSIYSAHSPFFSIDEDVLAIGASIHATFALSYHSYLTNPDPF 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02504 438 CDD M20_IAA_Hyd 54 428 IPR044757 GO:0009850|GO:0016787
Spst3g02504 438 NCBIfam amidohydrolase 55 417 IPR017439 GO:0016787
Spst3g02504 438 Gene3D - 219 337 - -
Spst3g02504 438 Pfam Peptidase family M20/M25/M40 111 425 IPR002933 GO:0016787
Spst3g02504 438 SUPERFAMILY Zn-dependent exopeptidases 50 428 - -
Spst3g02504 438 PANTHER PEPTIDASE M20 FAMILY MEMBER 32 430 IPR017439 GO:0016787
Spst3g02504 438 FunFam N-acetyldiaminopimelate deacetylase 219 336 - -
Spst3g02504 438 PIRSF Amidohydrol_AmhX 39 431 IPR017439 GO:0016787
Spst3g02504 438 SUPERFAMILY Bacterial exopeptidase dimerisation domain 219 338 IPR036264 -
Spst3g02504 438 Gene3D Zn peptidases 56 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02504 Spst-Chr3 72941274 72943974 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02504 K14664 - gmx:100780711 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02504 3 72941274 72943974 Spst3g02504 3 72941274 72943974 ECH