Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02473 ATGAAGAGAGCAGTTATCCCCTCTTATTTTCACTGTTTACGTTGTCATAATCCATTTATGGGTTTTAGTCCAAAATGTTTGAGTGTGAATTTTTCCTCTTCTTTGTGTTCAACCGATGCCAGACCTTTTCCTGATTACTCCCCAAGAAAGCCGTCAGTTAAAGACTCTGACTTTGTGCACCACATTTCAACCACTGTTAAGCAGCGCTGCACCGAGCCTCTTCGCCGGATTCTCAAGCCCTTCGAGTCAAAGTTCAAGCCTGACCATCTCATTTGGGTTCTTATGAACATCAAGGATGACTATAAACTTGTGTTGGATTTCTTCAACTGGACGCGCTTTCGGAGGGACCCTTCTTTGGAAGCCCTTTGCATTGTGGTTCATATTGCTGTGGCTTCTAAGGACTTGAAAATGGCTCACAGGCTGGTTTTGGAATTTTGGGAAAAGCCTCATTTGGATGTTGGTAACTCGTTTGCTCAGTTTACTGAGAGGTTGATTTATACTTACAAGGACTGGGGCGCACATCCCTTTGTGTTTGACGTGTTCTTCCAAGTTCTTGTTGAAGCAGGGTTGCTTCTAGAAGCTGAGAAACTGTTTGATAAATTGGTAAATTATGGCGTTCTTGTCTCTGTAGATTCTTGTAATTTGTTTCTAGCTAGGTTATCAAACAGTTTTGATGGGAAAAAGATGGCAATTAGGGTGTTCAGAAAGTATCCAGAAGTGGGTGTTCGTTGGAATACCATGTCGTATAATATTATTCTTCATTCACTTTGTCAATTGGGTAGGATAAAAGAAGCTCATAATCTGCTCATACAAATGGATTTTAGGGGGAGTTTTCCTGATGTTGTAAGTTATAGTGTTATAATTAATGGATACTGTCAGGTTGAACTGATAGGAAAGGTCTTGAAGCTCCTGGAAGAGTTGCAGAGAAAGGGGTGTAAACCGAATCAATACACATACAATAGCGTAATTTCCCTTCTTTGTAAGACTGGTAGAGTAGTTGAAGCGGAGCAAGTCCTGAGGGGGATGATAAACCAGAGGATTTTTCCTGATAATGTGGTGTATACAACTCTCATCAGTGGGTTTGGCAAGTCTGGGAATGTTTCAGCTGAATACAAACTTTTTGATGAAATGAGGCATAAGAAAATAGTTCCTGACTTTGTGACGTATACTTCCATGATTGGTGGCCTCTGTGGAGCTGGAAAGGTGGTGGAAGCACGTAAACTGTTTAGTGATATGTTTAGAAAAGGGTTGGAACCAGATGAAGTTACTTATACTGCTCTTATTGATGGGTATTGCAAGGCTGGGGAAATGAAAGAGGCATTCTCTCTTCACAACCAGATGGTTGAGAGGGGTCTGACTCCTAATGTTGTCACTTATACAGCATTGGTTGATGGCCTGTGTAAACGGGGACAGGTAGATATAGCAAATGAGCTTCTTCTTGAAATGTCTGAAAAGGGCCTTCAACCAAATGTCTGCACATATAATGCAATAATCAATGGTCTTTGTAAGGTAGGAAATGTAGAACAAGCCTTAAAACTTATGGAAGAAATGGATCTGGCGGGGTTTTATCCTGATACTATTACATATACTACACTGATGGACGCTTATTGTAAGATGGGTGAAATGGCCAAGGCTCATGGATTGCTGCGGGTTATGCTTGACAAAGGACTTCAACCTACAATTGTTACATTCAACGTGCTAATGAATGGGTTTTGCATGTCAGAGATGTTGGAAGATGGTGAAAAACTAATCAAATGGATGTTAGAAAAAGGTATAATGCTGAATGCCGCAACATTCAATTCTCTTTTGAAGCAGTACTGTATTAGAAATGACATGCGGGCTGCAACAGAGATTTATAAGAGGATGTATGCTCAAGGGGTGTTGCCTGACAATAATACCTATAATATTTTGATTAAAGGGCATTGTAAAGCTAGAAATATGAAAGAGGCATTGTTTTTGCATAAACATATGGTTGAAAAGGGATTTAGTCTGACTGCTGGTTCCTATAATGCTCTTATAAAGGGTTTCTATAAGAGGAAGAAATTTTTGGAGGCTAAGAAGCTATTTGAAGAGATGAGAACTCAAGGATTTGTTGCAGAAAAAGAGATATATGATATTTTTGTTGATGTAAACTATGAAGAAGGGAACTGGGAAAATACTCTTGAGCTTTGTGATGAAGCAATAGAGAAATGTCTTGTTAAGAAAACTTCGTTGTTTATCGACACTTTATGA 2232 0.3947 MKRAVIPSYFHCLRCHNPFMGFSPKCLSVNFSSSLCSTDARPFPDYSPRKPSVKDSDFVHHISTTVKQRCTEPLRRILKPFESKFKPDHLIWVLMNIKDDYKLVLDFFNWTRFRRDPSLEALCIVVHIAVASKDLKMAHRLVLEFWEKPHLDVGNSFAQFTERLIYTYKDWGAHPFVFDVFFQVLVEAGLLLEAEKLFDKLVNYGVLVSVDSCNLFLARLSNSFDGKKMAIRVFRKYPEVGVRWNTMSYNIILHSLCQLGRIKEAHNLLIQMDFRGSFPDVVSYSVIINGYCQVELIGKVLKLLEELQRKGCKPNQYTYNSVISLLCKTGRVVEAEQVLRGMINQRIFPDNVVYTTLISGFGKSGNVSAEYKLFDEMRHKKIVPDFVTYTSMIGGLCGAGKVVEARKLFSDMFRKGLEPDEVTYTALIDGYCKAGEMKEAFSLHNQMVERGLTPNVVTYTALVDGLCKRGQVDIANELLLEMSEKGLQPNVCTYNAIINGLCKVGNVEQALKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHGLLRVMLDKGLQPTIVTFNVLMNGFCMSEMLEDGEKLIKWMLEKGIMLNAATFNSLLKQYCIRNDMRAATEIYKRMYAQGVLPDNNTYNILIKGHCKARNMKEALFLHKHMVEKGFSLTAGSYNALIKGFYKRKKFLEAKKLFEEMRTQGFVAEKEIYDIFVDVNYEEGNWENTLELCDEAIEKCLVKKTSLFIDTL 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02473 743 FunFam Pentatricopeptide repeat-containing protein At5g39710 333 438 - -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Spst3g02473 743 Pfam PPR repeat 242 272 IPR002885 -
Spst3g02473 743 Pfam PPR repeat 555 585 IPR002885 -
Spst3g02473 743 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 350 538 - -
Spst3g02473 743 Pfam PPR repeat 668 697 IPR002885 -
Spst3g02473 743 Pfam PPR repeat 182 206 IPR002885 -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Spst3g02473 743 Gene3D Tetratricopeptide repeat domain 343 413 IPR011990 GO:0005515
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Spst3g02473 743 Gene3D Tetratricopeptide repeat domain 177 342 IPR011990 GO:0005515
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Spst3g02473 743 FunFam Pentatricopeptide repeat-containing protein At5g39710 439 544 - -
Spst3g02473 743 Gene3D Tetratricopeptide repeat domain 612 739 IPR011990 GO:0005515
Spst3g02473 743 Gene3D Tetratricopeptide repeat domain 433 521 IPR011990 GO:0005515
Spst3g02473 743 Pfam PPR repeat family 595 643 IPR002885 -
Spst3g02473 743 Pfam PPR repeat family 279 328 IPR002885 -
Spst3g02473 743 Pfam PPR repeat family 349 397 IPR002885 -
Spst3g02473 743 Pfam PPR repeat family 419 468 IPR002885 -
Spst3g02473 743 Pfam PPR repeat family 489 538 IPR002885 -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 527 560 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 492 526 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 668 698 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 562 595 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 248 281 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 387 421 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 317 350 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 457 491 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 598 630 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 352 385 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 282 315 IPR002885 -
Spst3g02473 743 NCBIfam pentatricopeptide repeat 422 456 IPR002885 -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Spst3g02473 743 SUPERFAMILY HCP-like 459 696 - -
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Spst3g02473 743 Gene3D Tetratricopeptide repeat domain 522 611 IPR011990 GO:0005515
Spst3g02473 743 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02473 319 739 Glycosyltransferase AT1G05670 27.059 2.64e-54 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02473 - - gmx:100789069 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02473 3 72419257 72421488 Spst3g02473 3 72419257 72421488 ECH