Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02423 ATGGAGAAAAGAAATCGATCTGGGATATCTGATAAGGATATCAGTTTTGCGATTGTTCGTAAATTATCATATCCCGACTTCGATGTTTCAGTGGTGAAGATGTCGACTCCGGCGAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATAAGTGGGGCTCCCCAAGACAACAATATTATGCTTTGGAATGCTGTTATATTTGGACCAGATGACACCCCTTGGGATGGAGGTACGTTTAAGTTGACGCTTCAGTTTACAGAGGATTATCCTAATAAGCCACCTACTGTGCGCTTTGTTTCTAGAATGTTTCATCCGAACATTTATGCGGATGGAAGTATATGCTTGGACATTTTGCAAAATCAGTGGAGTCCTATCTATGATGTAGCAGCAATTCTGACCTCAATCCAGTCATTGCTGTGTGATCCAAATCCAAATTCTCCTGCAAATTCTGAAGCTGCTCGAATGTTCAGTGAGAACAAACGTGAATACAACCGAAGAGTACGGGAGATTGTCGAGCAGAGTTGGACTGCTGATTAA 558 0.4229 MEKRNRSGISDKDISFAIVRKLSYPDFDVSVVKMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02423 185 Pfam Ubiquitin-conjugating enzyme 41 177 IPR000608 -
Spst3g02423 185 SMART ubc_7 40 183 - -
Spst3g02423 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 110 125 IPR023313 -
Spst3g02423 185 CDD UBCc 40 178 IPR000608 -
Spst3g02423 185 SUPERFAMILY UBC-like 27 183 IPR016135 -
Spst3g02423 185 Gene3D Ubiquitin Conjugating Enzyme 32 181 IPR016135 -
Spst3g02423 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 37 183 IPR000608 -
Spst3g02423 185 FunFam Ubiquitin-conjugating enzyme E2 2 34 181 - -
Spst3g02423 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 36 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02423 Spst-Chr3 68933344 68937934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02423 40 153 Miscellaneous Gene Families AT1G17280 31.092 9.04e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02423 K10573 - csin:114323782 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02423 3 68933344 68937934 Spst3g02423 3 68933344 68937934 ECH
Spst3g02423 3 68933344 68937934 Spst3g04675 3 98568949 98571735 PCT