Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02417 ATGGCTGATCCTCAGAAAACTGCTCTTGGCGAGAGAGATATCGAGCAGGCAATTACATTTCTTAAGAAAGGCTCATATCTGCTGAAGTATGGACGGAGAGGGAAGCCGAAGTTCTGTCCATTTAGGCTTTCCAATGACGAGTCTATACTCTTATGGTACTCTGGCAAGGAAGAGAAGCAGCTTAAGCTCAGTACGGTTTCAAAGATCATTCCAGGGCAGCGAACTATATGCAAGGACAAAGAAGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGATGTAACAGTCGCAAGTGGAGATTGGAGTCAAGAACTGATGACAGTCAGTGTTCTGATAGTCCAAACTCTGGCACACGAAGATCCACTCCATCAATTACACCACTTTTTGACCCTGTAGATGCTGGAGGAGCTGCTTTTGATGTGCAAAATAGATGGGTTAAGGCTTTCTCTGAAATAATTTCTCACAACACAGCTAGCAAGAGTCCTAGTCATGCTGAATCAAATGCAAATTCCTCCTTATCCTCTGGGTCTATGGATAACTCAAGCAATCGAAATTCTGCATCTGACGCATTCCGAGTTAGTTTGTCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCCTAGGTGATGTTTTTATTTGGGGAGAAGGTATCGGCAATGGAATTCTTGGTGGTGGTGGTGGTGTGTATAGAGTTGGAGCCATATCTAGTTCTGAGATGGATGCATTTCTCCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCACAGTATTAGCTGTGGCTATAGACATGCTGTTCTAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTGGAAATGGATGTTTTTCACCCTAAGCTTGTTGACACTTTTGGTGGCATGAATATCGAGTTAGTTGCATGTGGAGAATATCATACATGCGCTGTTACTTATTCAGGGGATCTTTATACTTGGGGTGATGGTGCTCACCATTCTGGCATCCTTGGGCATGGAAGTGAAGCTAGTCACTGGATTCCTAGGAAAGTAAGTGGTAACTTGGAGGGTTTACGTGTATCTTATGTGTCCTGTGGACCTTGGCACACAGCCATTGTTACATCAGCTGGACAGTTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTAGGACATGGAGGTCATAGTAGCACAACTATTCCTCAGGAAGTAGAAACTCTGAGAGGGTTTAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTCGAGGTGATAAATGAATCTGTGGAATCTTCTGCATGCTCATCTAGTGGAAGATTGTTCACCTGGGGTGATGGAGATAAAAGGCAACTTGGACATCCTGATAGGGAACCTAGACTAGTTCCTAAGTGTGTAACTGCATTGAGTACTGAAAACATTTGCCAGGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACATCAGGATGGGTATATACAATGGGAAGTAATGCTTATGGGCAACTTGGGTGTCCTGCATCTGATGGGAAAGTCCCTACACGTGTTAAAGTTGCTGACAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACAGGAATAAACCCACACTTGTTGAGTTTTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACAGCTGTTGTATGTCTTCACAAATGGATCCCAAGTGTTGACCATTCTACATGTTTTGGCTGTCGCAGTCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCTTGCACCAACAAGAAATCTTTAAAAGCTTCCCTTGCTCCCAGTTCCAACAAACTGTATCGAGTTTGTGATGACTGTTATCTTAAACTTAAGAAGAAACCTGCTGAATCAGTACCCTTCGTGCAAACTCCTAGCTTGAGAAGTGTAAGTATGCAAGAGAGAACCACTAAAATACAAGGGCTATTGAGGCTTTCATCTTTTGGTTCTGTTATTCAAACAGCAAGTAGTCACTCAAAGCTTCCAGATTCACAAGATAGCCATCGTGTCCCAGCTTCAAATGGAAAATTAGAGATGAGGGGTTTTGTTTCTTCAAAATCATCCAATTCTCTTCCTGTAGATTCTAAGAAACACCTTTCATTTTCTGAGCCTGCCGCAAGAATATCTTGTCAATCAACATCTCCAGTTTCATCTAAGTCAAGTCCAAGACAATCCTATGAAGATGTCAATGAGGATTTAAAGCACAGAAATGATATTTTAAGTCAAGAAGTTATAAGTTTAAGGACTCAGGTTGAGGGTCTTACACGTAAATCAAAAAGGTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTTCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAGTCATTGACTGCACAGGTTGGGCGTTCTATCCGTAGGGTTTTCTTTTTCTCCCCTTTTACATTACTAAGCATGGTTGAAGTTTGTTAG 2655 0.42 MADPQKTALGERDIEQAITFLKKGSYLLKYGRRGKPKFCPFRLSNDESILLWYSGKEEKQLKLSTVSKIIPGQRTICKDKEEAEIWFVGLKALVTRCNSRKWRLESRTDDSQCSDSPNSGTRRSTPSITPLFDPVDAGGAAFDVQNRWVKAFSEIISHNTASKSPSHAESNANSSLSSGSMDNSSNRNSASDAFRVSLSSAVSSSSQGSYHEDFDSLGDVFIWGEGIGNGILGGGGGVYRVGAISSSEMDAFLPKALESKLVLDVHSISCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFHPKLVDTFGGMNIELVACGEYHTCAVTYSGDLYTWGDGAHHSGILGHGSEASHWIPRKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGGHSSTTIPQEVETLRGFRTTRVACGVWHTAAVVEVINESVESSACSSSGRLFTWGDGDKRQLGHPDREPRLVPKCVTALSTENICQVACGHSLTIALTTSGWVYTMGSNAYGQLGCPASDGKVPTRVKVADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSTCFGCRSPFNFRRKRHNCYNCGLVFCKSCTNKKSLKASLAPSSNKLYRVCDDCYLKLKKKPAESVPFVQTPSLRSVSMQERTTKIQGLLRLSSFGSVIQTASSHSKLPDSQDSHRVPASNGKLEMRGFVSSKSSNSLPVDSKKHLSFSEPAARISCQSTSPVSSKSSPRQSYEDVNEDLKHRNDILSQEVISLRTQVEGLTRKSKRLEAELERTSKQLKEVTAVASDEAGKCKSAKEVIKSLTAQVGRSIRRVFFFSPFTLLSMVEVC 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02417 884 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 388 IPR000408 -
Spst3g02417 884 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 268 278 IPR000408 -
Spst3g02417 884 Pfam Regulator of chromosome condensation (RCC1) repeat 557 604 IPR000408 -
Spst3g02417 884 Pfam Regulator of chromosome condensation (RCC1) repeat 282 330 IPR000408 -
Spst3g02417 884 Pfam Regulator of chromosome condensation (RCC1) repeat 453 502 IPR000408 -
Spst3g02417 884 Pfam Regulator of chromosome condensation (RCC1) repeat 333 384 IPR000408 -
Spst3g02417 884 Pfam Regulator of chromosome condensation (RCC1) repeat 389 437 IPR000408 -
Spst3g02417 884 Pfam Regulator of chromosome condensation (RCC1) repeat 506 552 IPR000408 -
Spst3g02417 884 SUPERFAMILY FYVE/PHD zinc finger 608 675 IPR011011 -
Spst3g02417 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 682 IPR013083 -
Spst3g02417 884 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 440 IPR000408 -
Spst3g02417 884 MobiDBLite consensus disorder prediction 742 758 - -
Spst3g02417 884 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 333 IPR000408 -
Spst3g02417 884 MobiDBLite consensus disorder prediction 111 128 - -
Spst3g02417 884 Coils Coil 785 840 - -
Spst3g02417 884 Gene3D - 445 614 IPR009091 -
Spst3g02417 884 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Spst3g02417 884 MobiDBLite consensus disorder prediction 767 786 - -
Spst3g02417 884 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 856 - -
Spst3g02417 884 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 427 437 IPR000408 -
Spst3g02417 884 Gene3D - 149 344 IPR009091 -
Spst3g02417 884 Gene3D - 345 444 IPR009091 -
Spst3g02417 884 MobiDBLite consensus disorder prediction 718 733 - -
Spst3g02417 884 MobiDBLite consensus disorder prediction 718 792 - -
Spst3g02417 884 CDD PH_PLC_plant-like 12 95 - -
Spst3g02417 884 MobiDBLite consensus disorder prediction 106 130 - -
Spst3g02417 884 SUPERFAMILY PH domain-like 13 94 - -
Spst3g02417 884 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Spst3g02417 884 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Spst3g02417 884 PRINTS Chromosome condensation regulator RCC1 signature 284 300 IPR000408 -
Spst3g02417 884 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Spst3g02417 884 PRINTS Chromosome condensation regulator RCC1 signature 391 405 IPR000408 -
Spst3g02417 884 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Spst3g02417 884 MobiDBLite consensus disorder prediction 160 188 - -
Spst3g02417 884 Pfam Transcription factor BRX N-terminal domain 843 861 IPR027988 -
Spst3g02417 884 SUPERFAMILY RCC1/BLIP-II 216 609 IPR009091 -
Spst3g02417 884 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 555 IPR000408 -
Spst3g02417 884 CDD FYVE_like_SF 617 670 - -
Spst3g02417 884 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Spst3g02417 884 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Spst3g02417 884 Gene3D - 13 76 IPR011993 -
Spst3g02417 884 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Spst3g02417 884 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 218 281 IPR000408 -
Spst3g02417 884 SMART fyve_4 604 675 IPR000306 GO:0046872
Spst3g02417 884 FunFam PH, RCC1 and FYVE domains-containing protein 1 189 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02417 Spst-Chr3 68662071 68667179 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02417 - - pvu:PHAVU_003G066900g 1438.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02417 3 68662071 68667179 Spst3g02417 3 68662071 68667179 ECH