Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02211 ATGGAGATCGCTCACGAGCCACCGCCTTCCCTCGACGGAACCCCCATCCCCGCCGAGACCCTCGCGAATTCTCCTTTGTCGTCTTCCCCTTCTTCCTCCTCTTCCTCCTCCTCCGCTTCGTCGCCTCGCGGTTCCAAGGGTAAGGAGATCGAGTCCACCTCGTCGACAACGGGGATGGCACCCGCTCCTGCTAAATACGACGAGGAGGAGGAAGAGGACGTGTGCCGAATTTGCCGGAACCCTGGCGACGCAGAGAATCCACTCCGGTATCCCTGCGCGTGCAGCGGGAGCATAAAGTTTGTGCATCAGGATTGTCTCCTACAGTGGCTTAATCACAGCAACGCCCGCCAATGCGAGGTCTGCAAGCATGCATTTTCATTCTCTCCTGTTTATGCTGAGAATGCCCCAGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCTTGCCATGTTCTGCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCTTAATTATACCTTTTATAACATTCTGGATATGGCGATTAGCATTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTGTCGACTGCAGTTATTCTGACTGATTGTCTCCATGGTTTCTTACTTTCTGCAAGCATTGTATTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGGCAGGACGCCGATAGAGAAGATGAAGTGGATAGAAATGGTGCTCGAATGGCTAGAAGACCTCCTGTACAGGCTAATCGAAATGTCAATGGTGATGGGAATGGTGAAGATGCTGGTGGAGTGCAAGGAATTGCAGGGGCTGGTCAAGTAATTAGGAGAAATGCCGAAAATTTTGGTGCACGATGGGAGATGCAAGCAGCACGACTTGAAGCACATGTTGAGCAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAAGATGTTCCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCATTTGGTTGAAAATGCATTTACTGTGCTGGCGAGTAATATGATTTTCCTTGGAGTTGTAATCTTTGTGCCATTCTCCTTGGGTCGAATCATACTCCATTACCTATCCTGGTTCTTCTCAACTTCTAGTGGTCCTGTGTTGTCGGCTGTGGCCCCACTTGCAGACACATCTCTTACTCTGGCAAATATTACTTTAAAGAATGCATTAACAACTGTTAAAAACTTAACATCTGAAACACAAGAAAGTGGACCAATTGGTCAGGTTGCAGAAATGGTAAAAGCGAATGCTAGTGAGTTGAGTGAAATGTCAAACAATATAACATCTGCCTCAGCTGATATCTTGAAAGCAGGGTCAATTGGAACTTCAAGGCTTTCTGATGTTACCACCCTAGCTATTGGATATGTTTTTATACTGACTCTAATTTTCTGCTACTTTGGAATTGTTGCTTTAATTCGCTACACAAAGGGTGAGCCTTTGACAGTGGGAAGATTTTATGGCATTGCTTCTATAGCAGAGACAGTTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTTTTAGTCATTGAACTTGGGGTATTTCCTTTGATGTGTGGGTGGTGGCTCGATGTTTGTACTATTCAAATGTTTGGAAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCCCCTCTAGCAAGCTCATTGGTTCATTGGGTTGTTGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGTCTTCTTAGAGGGGTTTTACGGAATGGTGTTTTATATTTCCTTCGGGATCCTGCTGATCCAAATTATAATCCATTCCGTGATCTTATAGATGATCCTGTGCACAAACATGCACGCAGGGTTCTATTATCTGTTGCAGTTTATGGGAGTCTGATTGTGATGCTGGTATTCTTGCCTGTCAAACTTGCCATGCGGATGGCACCTTCCATTTTCCCACTTGACATATCGGTATCTGATCCATTCACTGAAATTCCAGCAGACATGCTTCTCTTTCAGATTTGTATCCCATTTGCAATTGAGCATTTTAAATTGAGAACAACTATAAAATCCCTACTGCGCTATTGGTTTACTGCTGTTGGTTGGGCACTTGGTTTGACTGATTTCTTACTGCCTAGACCTGATGACAGTGGTAATCAGGAAAATGGAAATGGGGAGCCAGGTAGGCAGGAAAGACTACAAGTAGTCCAAGCTGGAGTGCATGATCAGGGTTTGGTGCCATTTGCAGGCGATGATTTGAACAGGGTCATTAATTCAGCGGGAGAATTGAATGCTGGAGAGGATTATGATAATGATGAACAATCCGACTCTGACAGTTATGCCTTTGTGCTTCGCATTGTTCTTCTACTGGTGATTGCTTGGATGACTCTCCTTGTGTTCAACTCTGCTTTGATTGTTGTACCAATTTCACTTGGACGGGCACTTTTCAATTCTATTCCTCGGCTGCCCATAACTCATGGCATTAAATGCAATGATCTGTATGCATTTATAATTGGAAGCTATGTAATCTGGACTGCTGTTGCTGGAGTTAGATATTCAATTGAACAAATAAGAAAAAGGAGAGCTTCTGTCTTGTTTGGCCAAGTATGGAAATGGTGTGGCATTCTTGTGAAGAGTTCTGCACTTCTGTCCATTTGGATATTCGTAATCCCAGTGCTAATTGGGCTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCAGTGGATGAGAGTCCAGTATTCCTTCTTTATCAAGACTGGGCATTAGGGCTTATATTTCTGAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGATGAAAGTTGGCGAGTCAAATTTGAGAGGGTGAGAGAGGATGGTTTCTCCAGGTTACAAGGTCTTTGGGTCCTTCGGGAGATTGTACTTCCAATTATAATGAAGTTGTTGACAGCATTATGCGTACCTTATGTTTTGGCCAAAGGTGTATTTCCAGTGCTTGGTTATCCATTGGTGATCAATTCTGCTGTCTATCGGTTTGCATGGTTGGGATGCCTCTGTTTCAGTTTCTTGTGCTTCTGTGCCAAGAGATTCCATGTCTGGTTCACAAATCTCCATAACTCAATACGTGATGACCGGTATCTCATTGGCAGAAGGTTGCATAATTATGGAGAACATGTTGAGAAAGCAACTGAGGCGGGAAGCTCTACAGAGTTGCAGGACACTATTTTACTGGGTACGGGCCTAAACCAACAAGATCATGATGCAGATGTTGGACTACGGTTGAGGCGTGTAAATCAACAGGCAGGCTGA 3366 0.4427 MEIAHEPPPSLDGTPIPAETLANSPLSSSPSSSSSSSSASSPRGSKGKEIESTSSTTGMAPAPAKYDEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARMARRPPVQANRNVNGDGNGEDAGGVQGIAGAGQVIRRNAENFGARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSTSSGPVLSAVAPLADTSLTLANITLKNALTTVKNLTSETQESGPIGQVAEMVKANASELSEMSNNITSASADILKAGSIGTSRLSDVTTLAIGYVFILTLIFCYFGIVALIRYTKGEPLTVGRFYGIASIAETVPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDSGNQENGNGEPGRQERLQVVQAGVHDQGLVPFAGDDLNRVINSAGELNAGEDYDNDEQSDSDSYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNSIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQIRKRRASVLFGQVWKWCGILVKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKGVFPVLGYPLVINSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEHVEKATEAGSSTELQDTILLGTGLNQQDHDADVGLRLRRVNQQAG 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02211 1121 CDD RING_CH-C4HC3_MARCH6 74 123 - -
Spst3g02211 1121 ProSiteProfiles Zinc finger RING-type profile. 75 122 IPR001841 -
Spst3g02211 1121 MobiDBLite consensus disorder prediction 1 68 - -
Spst3g02211 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 133 IPR013083 -
Spst3g02211 1121 PANTHER SSM4 PROTEIN 60 1077 - -
Spst3g02211 1121 MobiDBLite consensus disorder prediction 20 60 - -
Spst3g02211 1121 ProSiteProfiles Zinc finger RING-CH-type profile. 67 128 IPR011016 GO:0008270
Spst3g02211 1121 Pfam RING-variant domain 75 121 IPR011016 GO:0008270
Spst3g02211 1121 FunFam Probable E3 ubiquitin ligase SUD1 60 133 - -
Spst3g02211 1121 MobiDBLite consensus disorder prediction 245 280 - -
Spst3g02211 1121 SUPERFAMILY RING/U-box 70 125 - -
Spst3g02211 1121 SMART ringv_2 74 122 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02211 Spst-Chr3 61939727 61946024 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02211 K10661 - gmx:100813205 2049.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02211 3 61939727 61946024 Spst3g02211 3 61939727 61946024 ECH