Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02175 ATGTCAAGTACAAGTTTCCTTGATTTCCAATACAACCTCTCAAGGAGAAAATACTTGAGGAAGCCATCACGTCTGTTCTCCCGTGACAGGCAGAACTCTGGGCTGAAGAGTGTATTTCTTCAGCCTAACTCTGATGAGATGAAGCATGTGTTTGACAAATTTGATTCAAATAAAGATGGGAAAATTTCTCAACAGGAGTACAAAGCCACCATGAAGGCTCTAGGCATGGGGGACTCGGTTCATGAAGTGCCAAATATTTTCAAGGTGGTTGATTTGGATGGAGATGGATTCATCAACTTCAAAGAATTTATGGAGGCTCAGAACAAGGGTGGTGGGGTTAGGACTATGGATATACAGAGTGCCTTTCGGACGTTTGATAGGAATGGTGATGGGAAAATAAGTGCAGAAGAAATTAAAGAAATGCTTGGAAGGCTGGGAGATAGGTGCAGCATCGACGACTGCCGGCGAATGGTGAGAGCTGTGGACACTGACGGAGATGGCATGGTTGACATGGACGAGTTCACTACCATGATGACGCATTCCCTCAGACACGTTTGA 558 0.448 MSSTSFLDFQYNLSRRKYLRKPSRLFSRDRQNSGLKSVFLQPNSDEMKHVFDKFDSNKDGKISQQEYKATMKALGMGDSVHEVPNIFKVVDLDGDGFINFKEFMEAQNKGGGVRTMDIQSAFRTFDRNGDGKISAEEIKEMLGRLGDRCSIDDCRRMVRAVDTDGDGMVDMDEFTTMMTHSLRHV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02175 185 SMART efh_1 117 145 IPR002048 GO:0005509
Spst3g02175 185 SMART efh_1 153 181 IPR002048 GO:0005509
Spst3g02175 185 SMART efh_1 46 74 IPR002048 GO:0005509
Spst3g02175 185 SMART efh_1 82 110 IPR002048 GO:0005509
Spst3g02175 185 SUPERFAMILY EF-hand 45 180 IPR011992 -
Spst3g02175 185 Pfam EF-hand domain pair 46 106 IPR002048 GO:0005509
Spst3g02175 185 Pfam EF-hand domain pair 117 178 IPR002048 GO:0005509
Spst3g02175 185 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Spst3g02175 185 ProSiteProfiles EF-hand calcium-binding domain profile. 78 112 IPR002048 GO:0005509
Spst3g02175 185 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Spst3g02175 185 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Spst3g02175 185 FunFam calmodulin-like protein 3 112 182 - -
Spst3g02175 185 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Spst3g02175 185 Gene3D - 113 184 - -
Spst3g02175 185 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 117 179 - -
Spst3g02175 185 CDD EFh 117 179 IPR002048 GO:0005509
Spst3g02175 185 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Spst3g02175 185 Gene3D - 5 112 - -
Spst3g02175 185 CDD EFh 46 106 IPR002048 GO:0005509
Spst3g02175 185 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02175 Spst-Chr3 60768465 60769022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02175 1 181 EF-hand Containing Proteins AT2G15680 59.459 8.70e-80 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02175 K13448 - gmx:100803158 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02175 3 60768465 60769022 Spst3g02175 3 60768465 60769022 ECH