Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01523 ATGGTAATGGCAGCAGCATGTAACATAGTTCATGAGTATGTCCTCATAATCTCGTGTCTCGGTTTCATCGTCACCCTCCACCACCTCCTCTCCCTCTTCGCATGGATCTTCCGAACCTGCTTCCGATCCGAGAAAAACCTCGTCCGAACCTACGGTTCCTGGGCTCTAGTGACCGGAGCCACCGACGGCATCGGAAAGGCCTTCGCCTGCGAGCTGGCACAGCGGGGACTCAACCTCATCCTCGTCAGCAGAACCTTCCAGAAGCTCGAAGCCGTTGCGCGTGAAATCAAGGCGAAGCATCCAAACGCGCGCGTAAAGGTGGTTGAGATGGACTTCGCGTGCGGCGACCTCTCGGAGGGGCTGCGGCGCCTGGAGGAGGCGATTGAGGGGTTGGATGTTGGCGTGTTGGTGAACAACGTGGGGATCACGTATCCCAGTGCGATGTTTTTTGATGAAGTGGAGGAGAGTGTGTGGAGGAAGATTGTTAGAGTGAACGTGGAAGGAACAACCAGAGTAACCAAATGTGTTTTGCGTGGGATGTTGGAACGGAGAAAGGGTGCCATCGTTAACATTGGCTCCGGTGCTTCGGTGGTTGTGCCTTCCCATCCTCTCTACACCGTCTATGCTGCCACCAAAGCTTACGTGGATCAATTTTCAAGATCTCTCTACGTGGAGTATGGACAATATGGGATACATGTGCAATGTCAGGTACCACTGTACGTGGCAACGAATATGGTATCGAGGGTGGCTTGTATTGAGAGAGATTCATTGTTTGTGCCAACACCTGAGGCTTATGCAAGAGCAGGAGTTGAAGAAATCGGATACAAACCAAAGTGCACACCTCATTGGGCTCACTCACTTCAGTGGTTCTTCGCACACTTAATCCCCGACCCTCTCCTCGATGCTTGGCGATTCTCCATTGCTGTTCGTCGCAGGAACCAAAACCAATAA 951 0.5237 MVMAAACNIVHEYVLIISCLGFIVTLHHLLSLFAWIFRTCFRSEKNLVRTYGSWALVTGATDGIGKAFACELAQRGLNLILVSRTFQKLEAVAREIKAKHPNARVKVVEMDFACGDLSEGLRRLEEAIEGLDVGVLVNNVGITYPSAMFFDEVEESVWRKIVRVNVEGTTRVTKCVLRGMLERRKGAIVNIGSGASVVVPSHPLYTVYAATKAYVDQFSRSLYVEYGQYGIHVQCQVPLYVATNMVSRVACIERDSLFVPTPEAYARAGVEEIGYKPKCTPHWAHSLQWFFAHLIPDPLLDAWRFSIAVRRRNQNQ 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01523 316 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 49 305 IPR036291 -
Spst3g01523 316 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 48 280 - -
Spst3g01523 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Spst3g01523 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Spst3g01523 316 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Spst3g01523 316 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Spst3g01523 316 PRINTS Glucose/ribitol dehydrogenase family signature 54 71 IPR002347 -
Spst3g01523 316 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Spst3g01523 316 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Spst3g01523 316 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Spst3g01523 316 PANTHER RH59310P 14 315 - -
Spst3g01523 316 PIRSF 11-beta-HSD1 4 316 - -
Spst3g01523 316 Pfam short chain dehydrogenase 54 248 IPR002347 -
Spst3g01523 316 CDD 17beta-HSD1_like_SDR_c 52 296 - -
Spst3g01523 316 Gene3D - 46 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01523 Spst-Chr3 18673636 18675715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01523 13 313 Lipid Metabolism Gene Families AT1G24470 56.954 3.79e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01523 K10251 - cit:102621211 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01523 3 18673636 18675715 Spst3g01523 3 18673636 18675715 ECH
Spst3g01523 3 18673636 18675715 Spst1g01934 1 27581056 27583360 PCT