Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01521 ATGGACCCCTCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTATACGAAGATGGGGTTTGCTGGTAATGTTGAACCATGTTTTATTGTTCCGACAGTGGTTGCAGTTAATGAGTCGTTTCTGAATCAATCCAGGGGTTCTTCTAAAGGCAATTGGGTGGCCCAGCACAATGCTGGGGTTATGGCAGATCTTGATTTCTTCATTGGGGATGAGGCACTTTCCAAGTCTCGATCTAGTAGCACTTACAATCTCAGCTACCCGATTCGGCATGGCCAAGTTGAGAATTGGGATGCCATGGAGCGCTTCTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCGGAGGATCACTATTTCCTCCTGACCGAGAGTCCGTTGACCGCACCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAACGTGCCTGGACTTTACATTGGTGTGAATTCTGTGCTTGCTCTTGCCGCTGGATACACAACATCTAAGTGTGAGATGACAGGAGTTGTTGTGGATGTTGGAGATGGGGCAACTCACGTGGTACCTGTTGCAGATGGCTATGTTATTGGTAGCAGCATCAAATCGATTCCTATTGCTGGAAAGGATGTTACTCTTTTTGTTCAGCAGCTTATGCGGGAAAGAGGAGAGAATGTACCACCAGAAGACTCTTTTGATGTGGCACGGAAAGTGAAGGAAATGTATTGCTACACCTGCTCTGACATTGTGAAGGAATTCAATAAACATGACAAAGAACCTGGCAAGTACATTAAGCATTGGAGAGGCATTAAACCAAAGACAGGGGCACCATATTCATGTGATATTGGCTATGAACGATTTCTTGGCCCTGAGATTTTCTTTAATCCTGAGATATATGGCAGTGATTTTACGACCCCTTTGCCAGCTGTAATAGACAAGTGCATTCAGTCTGCGCCAATTGACACGAGGAGATCATTATATAAGAATATAGTGTTGTCTGGAGGTTCAACCATGTTCAAGGATTTTCACAGGAGATTGCAACGTGATATTAAAAAAATAGTGGATGCTCGTGTCCTTTCATCTGAAGCACGCTTAAATGGGGAGATAAAATCACAACCAGTGGAGGTAAATGTACTTAGCCATCCAATCCAAAGATTTGCGGTTTGGTTTGGAGGATCAGTACTTGCATCAACACCTGAATTTTTTACGCTGATCGTCGTTGCCTCTTTGTCTGGCAATATCCTGAGTTTTGTATGCTTTGCCAAGATAAACGAGTTTGATTGCACCTTATGGCTTGTCATACGAAGGCAGAATATGAGGAGTATGGAGCAAGCATTTGCCGCACCAATCCCGTTTTCAAGGGGATGTATTAAAGCAACAACGAATGAGTTGATCATGGATGCAATTACTTTGAATGAATATCCTGTTATTTTTTTCCCCTCAATTTCACTTCCTCTTCTTTCTTCCCACCTGTATTCGTGGTGGCAGGAGTGA 1491 0.4386 MDPSTSRPAVVIDNGSGYTKMGFAGNVEPCFIVPTVVAVNESFLNQSRGSSKGNWVAQHNAGVMADLDFFIGDEALSKSRSSSTYNLSYPIRHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIGVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVADGYVIGSSIKSIPIAGKDVTLFVQQLMRERGENVPPEDSFDVARKVKEMYCYTCSDIVKEFNKHDKEPGKYIKHWRGIKPKTGAPYSCDIGYERFLGPEIFFNPEIYGSDFTTPLPAVIDKCIQSAPIDTRRSLYKNIVLSGGSTMFKDFHRRLQRDIKKIVDARVLSSEARLNGEIKSQPVEVNVLSHPIQRFAVWFGGSVLASTPEFFTLIVVASLSGNILSFVCFAKINEFDCTLWLVIRRQNMRSMEQAFAAPIPFSRGCIKATTNELIMDAITLNEYPVIFFPSISLPLLSSHLYSWWQE 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01521 496 FunFam Actin-related protein 3 (ARP3) 205 303 - -
Spst3g01521 496 SUPERFAMILY Actin-like ATPase domain 7 177 IPR043129 -
Spst3g01521 496 SMART actin_3 7 419 IPR004000 -
Spst3g01521 496 PANTHER ACTIN 9 404 IPR004000 -
Spst3g01521 496 FunFam Actin-related protein 3 10 173 - -
Spst3g01521 496 CDD NBD_sugar-kinase_HSP70_actin 10 206 - -
Spst3g01521 496 Gene3D - 158 386 - -
Spst3g01521 496 Gene3D - 10 404 - -
Spst3g01521 496 Gene3D Actin; Chain A, domain 4 205 303 - -
Spst3g01521 496 Pfam Actin 7 405 IPR004000 -
Spst3g01521 496 SUPERFAMILY Actin-like ATPase domain 173 403 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01521 Spst-Chr3 18655142 18662271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01521 9 419 Miscellaneous Gene Families AT2G42100 33.253 1.41e-70 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01521 K18584 - gmx:100780462 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01521 3 18655142 18662271 Spst3g01521 3 18655142 18662271 ECH