Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01336 ATGGACACGGAGCTGAAGTCGGCAAAAGCGGCATACCGGAGCGCGAAAGCGGAGGGAAACCACCGGGAGGAGGCGCGGTGGGCCAACGTCGTCGGTGACATACTGAAAAACCGAGGAGAGTACGTAGAAGCCCTCAAATGGCTACGAATCGATTACGAAATTTCGCTCAAACATTTACCGGAGAAGCACTTGCTCCCAACCTGCCAATCCCTCGGCGAAATCTACCTCCGCCTCGAACACTTCCCCGACGCCCTAATTTTCCAGAAAAAACACTTAGAGCTCGCGAGGGACGCAAACGACGTCGTCGAGCAGCAGCGAGCGAGCACGCAACTCGGACGCACTTATCACGAACTGTTCTCGCGATCGGATCACGATCACAACTCGATTCGCAACGCAAAGAAGTACTTCAAGTGGGCGATGGATCTCGCGGTGAAGCTCAAAGAGAATCCTCCGAACAACAAGTCTTCTTATCTGAAGGAGTATATCGACGCGCACAACAACATAGGCATGCTTGAAATGGATCTCGATAACTTACACGAGGCGCGGAAGATTCTAACTAGTGGGTTGGAGATTTGTGATGAAGAGGAGGTCGCTGAATTCGACGATGGCCGCAGTAGGCTCCATCACAACCTTGGGAATGTGTATATGGAACTTAGGCTTTGGGATGAAGCTAGGAAAAACATCAAGAAGGATATAGTGATTTGTAACAGAATTGGACACTGTCAAGGGGAGGCCAAGGGGTATATTAATTTTGGTGAAATGCATTACAGGACTCAGAGGTACGAAGATGCTAGGGCTTATTACGAGAAGGCGCTTGGTTTGGCGAAGTCCTTGGAGGACGAAGATGCTTTGGTTAGGCAAATTGAGCAGAATATTGATACTGTGCGAGAAGCTGTTAAGGTAATGGCTGATATAACGAAAGAAGAGCAAAGCCTTAAAAAGCTTAAAAGAGATATAGCCGCGGCTAGAGGGACATCCAATGAGCGGAAATTCTTGCTGCAGCAGAATGCAGTTCTTGAACGTCTTGTTGAGAAAGCAAGGATGATCCTTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAGTGAACTCTGTGATAGGCAAAGGCTGGCTGATTCATATCTGGATGTTGCAGAATCATACCAGAAACTCAGAAAATTCAACAAAGCAATCAAATGGTACAAAAAGAGCTGGGAAATGTACAAAAATATTGGTAACTTAGAGGGGCAAGCGCTGGTGAAAATTAACATCGGTAATGTTTTGGATTCTACTAACAATTGGAGAGAAGCACTGGATGCATTTCAAGAGAGCTACAGTATTGCTGTTGAAGCAGACCTTCCTGATGTGCAACTCTCTGCCTTGGAAAATATGCATTATAGTAACATGATAAGATTTGATGATGAGGATGAGACCAGGAGATTGAAGCTTCTAATCGACAAGCAGAAGAAATCCAAAGAAAAAGAGGCAGCAGCTAAAAGTATGTCAGATGATTGTTGCTCTGAAACTGATACTGAAGCAGGTGATTATCTGTCAAACAGTGGGTCTGATAATTTTTGCTTTCCAAAGACAATTTCTCGATCAAAAGCTCTGATAACTGGAGAAGAATTGGGAGATGACACACCTATTATGTCCCTCTATCAGTCCATAAAAAGCTCATCCAAAAAGAAAAAAGACCACAAAGAAAGTCTTCTCAACTCTAACAAGCAAGCTGAGCAGTCACCCAGTAGTCTGAAAAATCAATCCAGCGATCATCAGACAGTTGTTAGTCGTAAACGTGTCCGTGTAATTCTTTCGGATGATGATGATGATGATGAGGTGGAGTGTTCAAGCAGGAGGGATCTCAATTGCCTGGTTATCTCCGAGTGTGGATCTAAGGGTGCAATTAAATTTGAAGAAAGTAGTAGTTCTTTCAAATGTTCAAGTCCACATACAGCCCCAAACACCGGCAGACATTCTAGGTCTTTCAGCAATGACATAGTTGCTGAAGCTGATTTTCCTACTGGTTCTAAATGTGACACTGATTTCTCTGGCAAACAAAATGATATTACCCAGCCTAGGCTGCATCATTCCCAAAATGACCCCCAGAAATGTATTACATGCCGGATTGAGAATGATCTAATACATTTTGAAGCAACCTTGTGTACCACTGGTGATCAGTTGAACATTGACTCTTTGAAGGCTGTCGTTGCATGCTTATATTATCTACAATTTCCGCCTGAAAAGAGATCAGAAGGTTTGTTACCCATTATTGAACGTATAAAATGTGCTGGAAGAGATATAGAATCCCTGGAAACTGTTGAACAACTTAAGGAAGTTCTGGGAAATGACATGGTTGAAGCTTCCGTTGATGGATGGATTCATAAGCGGCTGATAAAAATGTATGTAGACTGCTGCAAGGAGTTATCTGAGGTACCAAACATCAAGGTACTGAAGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGACTGCGACCTGCAAGATTTGTCTATTACACCATTGATAAATGCACTGCATTCCCAAAAGTCATTTGCGATGCTGGACCTCTCTCACAATTTGTTAGGAAATGGAACAATTGAGAAACTTCGAAAGGTGTTCACGGCATCAGGACAATCTTATGGGGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGGCCGACAACATTGTTTCAGATTTGCGAGTGTTCACTTCTGTTTGCTCGACTAGAAGTTCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCGACAATCTTAAAAAATTGTACAGATTCGCGCTGTAGATATGCCCCTTTCCATTTACTTACATTCTGTGTTGCAGCGCTTTGTAGCTTGAATATAGAGAACTGTTATGTCACATCCAGAACTATTCAAAAACTTGCAGATGCATTGGACTCCAGATCTGTTCTTACCCATCTATGTATAGGATACAACGGCCCTTTATCTGGAAATGTTATTATTAATCTTCTGTCCAAGCTTTCTACTCTGAAAAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAGCCAGTGGTGGATACCCTTTGCAAGCTTGCAGGGACCTTAACTTTATCAGGACTAATACTTGGAGGCACGGGCATTGGAACTGAAGGGGCGATAAAATTAGCAGAATCTTTGCTTAAAGGAACTGAAGAGCTTTGCTGTCTCAAAGTTTTGGTTCTTAGAAAGTGTCAACTTGGGCTTGCTGGAATCCTTCACATAATTGAGGCTCTCGCAGAGAACAGCTGCATTGAAGAACTTAATCTTGCTGATAATTCTTTTCCAAAGGAAGTTTCTGCTCTACAATATGATTTATCAGTAAAGAGCTGCTCACAATCCCAGCAGAAACTAGACAATATGCAAGTTGATGAGAATCGAAAGGTCCACTGTTCTATAAACACAGCCGACTATAGGCTGGTAGTTGCTGATAGTGAAGATATTCCAGTAGAAGCTGCTTCCAGAATTGACGACAGCTGTGCCAGTTCATGTCAAAGAAATTCATCTGCCGAGTGCCATTTCACGGAACAGTTTTCAATTGCTATTGGTAAGGCAAATAACTTGCAATTACTAGACCTTAGCAATAATGGTTTTTCTGCACAAGTTGCGGAAACATTCTATGGTTCGTGGGCGACTTTACGACCCTTTTCAAGTCATAAGCACATTACTGAGCAGATTGTTCATTTCTCAACGAGGGAAAATAAATGCTGCAGAGTGAAACCTTGCTGCAAGAAAGTTTGA 3789 0.4257 MDTELKSAKAAYRSAKAEGNHREEARWANVVGDILKNRGEYVEALKWLRIDYEISLKHLPEKHLLPTCQSLGEIYLRLEHFPDALIFQKKHLELARDANDVVEQQRASTQLGRTYHELFSRSDHDHNSIRNAKKYFKWAMDLAVKLKENPPNNKSSYLKEYIDAHNNIGMLEMDLDNLHEARKILTSGLEICDEEEVAEFDDGRSRLHHNLGNVYMELRLWDEARKNIKKDIVICNRIGHCQGEAKGYINFGEMHYRTQRYEDARAYYEKALGLAKSLEDEDALVRQIEQNIDTVREAVKVMADITKEEQSLKKLKRDIAAARGTSNERKFLLQQNAVLERLVEKARMILAWEKHCEFAKEKKKIASELCDRQRLADSYLDVAESYQKLRKFNKAIKWYKKSWEMYKNIGNLEGQALVKINIGNVLDSTNNWREALDAFQESYSIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDKQKKSKEKEAAAKSMSDDCCSETDTEAGDYLSNSGSDNFCFPKTISRSKALITGEELGDDTPIMSLYQSIKSSSKKKKDHKESLLNSNKQAEQSPSSLKNQSSDHQTVVSRKRVRVILSDDDDDDEVECSSRRDLNCLVISECGSKGAIKFEESSSSFKCSSPHTAPNTGRHSRSFSNDIVAEADFPTGSKCDTDFSGKQNDITQPRLHHSQNDPQKCITCRIENDLIHFEATLCTTGDQLNIDSLKAVVACLYYLQFPPEKRSEGLLPIIERIKCAGRDIESLETVEQLKEVLGNDMVEASVDGWIHKRLIKMYVDCCKELSEVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLRKVFTASGQSYGGLTLDLHCNRFGPTTLFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTDSRCRYAPFHLLTFCVAALCSLNIENCYVTSRTIQKLADALDSRSVLTHLCIGYNGPLSGNVIINLLSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGTLTLSGLILGGTGIGTEGAIKLAESLLKGTEELCCLKVLVLRKCQLGLAGILHIIEALAENSCIEELNLADNSFPKEVSALQYDLSVKSCSQSQQKLDNMQVDENRKVHCSINTADYRLVVADSEDIPVEAASRIDDSCASSCQRNSSAECHFTEQFSIAIGKANNLQLLDLSNNGFSAQVAETFYGSWATLRPFSSHKHITEQIVHFSTRENKCCRVKPCCKKV 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01336 1262 Coils Coil 278 325 - -
Spst3g01336 1262 PANTHER PROTEIN TONSOKU 632 1070 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Spst3g01336 1262 Gene3D Tetratricopeptide repeat domain 1 304 IPR011990 GO:0005515
Spst3g01336 1262 Gene3D Tetratricopeptide repeat domain 305 496 IPR011990 GO:0005515
Spst3g01336 1262 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Spst3g01336 1262 MobiDBLite consensus disorder prediction 555 593 - -
Spst3g01336 1262 MobiDBLite consensus disorder prediction 556 570 - -
Spst3g01336 1262 MobiDBLite consensus disorder prediction 490 510 - -
Spst3g01336 1262 SUPERFAMILY TPR-like 9 195 IPR011990 GO:0005515
Spst3g01336 1262 Pfam Tetratricopeptide repeat 376 446 - -
Spst3g01336 1262 Pfam Tetratricopeptide repeat 205 276 - -
Spst3g01336 1262 MobiDBLite consensus disorder prediction 571 589 - -
Spst3g01336 1262 SMART LRR_RI_2 909 936 - -
Spst3g01336 1262 SMART LRR_RI_2 1038 1065 - -
Spst3g01336 1262 SMART LRR_RI_2 954 981 - -
Spst3g01336 1262 SMART LRR_RI_2 850 877 - -
Spst3g01336 1262 SMART LRR_RI_2 1070 1097 - -
Spst3g01336 1262 SUPERFAMILY TPR-like 161 445 IPR011990 GO:0005515
Spst3g01336 1262 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
Spst3g01336 1262 SUPERFAMILY RNI-like 820 1221 - -
Spst3g01336 1262 SMART tpr_5 65 98 IPR019734 GO:0005515
Spst3g01336 1262 SMART tpr_5 416 449 IPR019734 GO:0005515
Spst3g01336 1262 SMART tpr_5 205 238 IPR019734 GO:0005515
Spst3g01336 1262 SMART tpr_5 162 195 IPR019734 GO:0005515
Spst3g01336 1262 SMART tpr_5 376 409 IPR019734 GO:0005515
Spst3g01336 1262 SMART tpr_5 245 278 IPR019734 GO:0005515
Spst3g01336 1262 FunFam Protein TONSOKU 1 154 - -
Spst3g01336 1262 Gene3D Ribonuclease Inhibitor 801 1243 IPR032675 -
Spst3g01336 1262 FunFam tonsoku-like protein 309 469 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01336 - - gmx:100817536 1962.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01336 3 16788689 16797993 Spst3g01336 3 16788689 16797993 ECH