Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01316 ATGAGGGGTGGCACGGTTCAGATTAGCTGGCACGAGAGCAAACCAGTCTTATCCCTCGATTTCCACCCTCTCTCCGCTACTCTAGCCACCGCCGGCGCCGATTTCGACATCAAGTTTTGGTCGATACAACCCGCGGGGACGCAGAAGAAGGTTCCCGTAGTTTCCTATCTTAGTGCCCTCTCTTACCATACCTCTCCAGTGAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGCTGGCTTCTGGTGCTGATGGAGGGGAACTGATAATATGGACACTACATTGTGCCGATACTGGTCAGACATGGAAGTTTCTCAAGGTGTTACGATCTCATCTGAAGGACATTTTGGACCTTCAGTGGTCCACCGATGCCACGTATATCATATCTGGATCTGTTGATAATTGTTGCATTATATGGGATGTTGACAAAGGAACTAGCATTCAGAAGTTGGAAGCTCATGCGCACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGGAAATATATTTCTTCTCTTAGTTCTGATAGGACCTGCAGAATTTACATGAATAAACCTTTTAAATCAAAGGGCATTGAGAAAATCCATTATGTATGTCAACAAATCATTTCCAAGGCAGATCAGCCATTATTAAAAGATTCCGAGGAGACAAAATGTCATCTCTTCAATGACGAGACAATGCCATCTTTCTTCAGAAGATTAGCATGGTCTCCCGATGGTTCATTTTTACTTGTGCCTGCAGGCTCTTACAAAATTAATACTGCATCTGAGTCCGTGAATGCGGCTTACATAATTTCTAGAAAAGATCTTTCTAGGCCCGCAATACAGCTCCCCTGTGCAAATAAAGCCGTCGTAGCTGTTCGGTTCTGTCCCATAATTTTTAAACTTCAGGGAACTCAGTCACTCAACTCAGCTGGGTTATTCAAGCTCCCGTATCGCATCATATTTGCTGTTGCCACTTTGAACTCACTGTACATTTATGACACCGAGAGCACCTCTCCGTTAGCTATATTAGCCGGTCTTCACTATGCCTCAATAACGGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCATCACAAGATGGTTTCTGCTCATTGGTGGAGTTTGAAAATGACGAACTTGGATCACCTTATGCTTTATCTGAAGGAAAAGTCTCGAAGGAGGATAGTAAGAGTACTGTACCGACAGCCGATGACAATGTCACTGTACCAAATGGGAATATTAGTGCAGTTCTAGCAGAGAGCAAGAAAATGGAATTAGAAGGGAAGGCTGATGACATGGTCACTGAAGCATATGTGAATATAGGTGGTGCAATAACAGAACAAAAGAGCACTGTAACACAAGAGAAACCTGACATCATGGAATTTGAGGCAACTGGGAACGTTGAAGGGGATAGAGCTGATAGTAGGAAAAATGGTGCAGAAGAGAAATCAACGGAAGCGACAGCAACTCTGCAATCACGTTTGGACGGTATAAAATCAGGGGCAGAAGAAAAGGGAGGGCAACGATTGTCCAGTTCGAAGAGTTCAAACTTCTCAAATAAGCCAGCCAAGAAGCATAATGTTCGGGAATGTACGGAGGTAACTGCACCAGCAGATACTCATGTCGCCAGCCATAGAGATCTGGAAAATACCATTGATGCGGACAGCTGTATTAGCTGA 1668 0.4418 MRGGTVQISWHESKPVLSLDFHPLSATLATAGADFDIKFWSIQPAGTQKKVPVVSYLSALSYHTSPVNVIRFSSSGELLASGADGGELIIWTLHCADTGQTWKFLKVLRSHLKDILDLQWSTDATYIISGSVDNCCIIWDVDKGTSIQKLEAHAHYVQGVAWDPLGKYISSLSSDRTCRIYMNKPFKSKGIEKIHYVCQQIISKADQPLLKDSEETKCHLFNDETMPSFFRRLAWSPDGSFLLVPAGSYKINTASESVNAAYIISRKDLSRPAIQLPCANKAVVAVRFCPIIFKLQGTQSLNSAGLFKLPYRIIFAVATLNSLYIYDTESTSPLAILAGLHYASITDITWSSDAHYLALSSQDGFCSLVEFENDELGSPYALSEGKVSKEDSKSTVPTADDNVTVPNGNISAVLAESKKMELEGKADDMVTEAYVNIGGAITEQKSTVTQEKPDIMEFEATGNVEGDRADSRKNGAEEKSTEATATLQSRLDGIKSGAEEKGGQRLSSSKSSNFSNKPAKKHNVRECTEVTAPADTHVASHRDLENTIDADSCIS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01316 555 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Spst3g01316 555 SUPERFAMILY WD40 repeat-like 13 403 IPR036322 GO:0005515
Spst3g01316 555 SMART WD40_4 330 370 IPR001680 GO:0005515
Spst3g01316 555 SMART WD40_4 101 140 IPR001680 GO:0005515
Spst3g01316 555 SMART WD40_4 143 182 IPR001680 GO:0005515
Spst3g01316 555 SMART WD40_4 3 41 IPR001680 GO:0005515
Spst3g01316 555 SMART WD40_4 53 92 IPR001680 GO:0005515
Spst3g01316 555 MobiDBLite consensus disorder prediction 445 534 - -
Spst3g01316 555 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 93 - -
Spst3g01316 555 Pfam WD domain, G-beta repeat 60 91 IPR001680 GO:0005515
Spst3g01316 555 Pfam WD domain, G-beta repeat 146 181 IPR001680 GO:0005515
Spst3g01316 555 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Spst3g01316 555 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Spst3g01316 555 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Spst3g01316 555 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Spst3g01316 555 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 93 IPR001680 GO:0005515
Spst3g01316 555 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Spst3g01316 555 Gene3D - 4 208 IPR015943 GO:0005515
Spst3g01316 555 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Spst3g01316 555 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Spst3g01316 555 Gene3D - 215 414 IPR015943 GO:0005515
Spst3g01316 555 MobiDBLite consensus disorder prediction 502 518 - -
Spst3g01316 555 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Spst3g01316 555 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Spst3g01316 555 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Spst3g01316 555 MobiDBLite consensus disorder prediction 461 479 - -
Spst3g01316 555 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 525 IPR045145 GO:0006335
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01316 18 198 Miscellaneous Gene Families AT5G08390 23.913 1.78e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01316 K10751 - gmx:547606 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01316 3 16625640 16634097 Spst3g01316 3 16625640 16634097 ECH