Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01295 ATGGTGAACTTCTCTCCATCATCCATGCACCTTCACAAGCTTACTCGCACTTCTCCTTCCTTCGGGAGTGCGTTCTTTCTGGTGGGTCATCGTGTTTTGGACATAAGAGTGCGTAATGGTTGTTTATTCCGCAAGAATCGGAGATGTTTCGGAGCGTCCATTTCGTGTTCGGGTGTTGGGAACGATTTGCCTTCTATTGAACAGCTGAGTGATGCACGGGTCATATACTCTGTCGCTCCATCTATGGGACACAATCAGGAGTCCCATCCAGAATCACATTTTCGAGTTCCTGCAATTGTGAATGCTCTAGAAGAAATGCAGCTCTCTTCAAAGTTCCGTGGCTCTGAGTTAATTGAACTTCAACATTTTGAGCCTGCTTCTGTAGATGATATTGCAAGCGTGCATGAAAGAGCCTATGTTTCTGGACTTGAAAAGGTTATGAATCAAGCTGTGGAGAAGGGCCTTATTTTAGTTGAAGGTTCTGGACCAACGTATGCCACTGCCACTACCTTTCAGGAGTCAATAATTGCAGCTGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCAGGTTCAAAGATAAAGAGTGATGCACCCACTGGTTTTGCTCTGATTAGACCACCAGGACATCATGCTGTTCCACAAGGACCTATGGGCTTCTGCATTTTTGGCAATGTGGCCATTGCAGCCCGTCATGCTCAGCGTGTTCATGGACTGAAGCGCGTGTTTATAATTGATTTTGATGTGCATCATGGGAATGGAACAAATGATGCTTTCTATAATGATCCAGATGTATTTTTCCTTTCGTTTCATCAAGATGGAAGCTACCCAGGTACTGGTAAATTTGATGAAGTGGGAAGTGGAGACGGTGAAGGAACCACATTAAATCTGCCTCTTCCTGGAGGCTCAGGCGATACTGCTATTAGAACCGTGTTCGATGAAGTTATTGCACCATGTGCTCAAAGATTTAAACCAGACATCATTCTTGTTTCTGCTGGGTATGATGGCCACGTGTTGGATCCACTAGCTAATCTTCAATATACGACTGGAACATATTACATGCTAGCGTCCAGTATTAAACAATTAGCCAGAGATTTATGTGGAGGGCGATGTGTGTTTTTCTTGGAAGGAGGATATAATCTGAAGTCTCTGTCATATTCCGTGGCAGACACATTCCGTGCTCTTCTTGGTGATCGAAGCTTGGCATCTGAGTTTGATGACCCTAACGTTTTGTACGAAGAGCCATCTACAAAAGTTAAGCAAGCAATTCAGAGGATAAAACACATTCATTCCCTGTGA 1299 0.4419 MVNFSPSSMHLHKLTRTSPSFGSAFFLVGHRVLDIRVRNGCLFRKNRRCFGASISCSGVGNDLPSIEQLSDARVIYSVAPSMGHNQESHPESHFRVPAIVNALEEMQLSSKFRGSELIELQHFEPASVDDIASVHERAYVSGLEKVMNQAVEKGLILVEGSGPTYATATTFQESIIAAGAGLALVDSVVAGSKIKSDAPTGFALIRPPGHHAVPQGPMGFCIFGNVAIAARHAQRVHGLKRVFIIDFDVHHGNGTNDAFYNDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAIRTVFDEVIAPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLARDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDRSLASEFDDPNVLYEEPSTKVKQAIQRIKHIHSL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01295 432 Gene3D Histone deacetylase domain 66 431 IPR037138 -
Spst3g01295 432 CDD HDAC_classII 89 396 - -
Spst3g01295 432 PANTHER HISTONE DEACETYLASE 2-RELATED 62 398 - -
Spst3g01295 432 Pfam Histone deacetylase domain 89 394 IPR023801 -
Spst3g01295 432 SUPERFAMILY Arginase/deacetylase 85 399 IPR023696 -
Spst3g01295 432 PRINTS Histone deacetylase superfamily signature 207 230 IPR000286 -
Spst3g01295 432 PRINTS Histone deacetylase superfamily signature 325 335 IPR000286 -
Spst3g01295 432 PRINTS Histone deacetylase superfamily signature 241 256 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01295 Spst-Chr3 16365142 16371055 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01295 - - gmx:100788664 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01295 3 16365142 16371055 Spst3g01295 3 16365142 16371055 ECH