Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01289 ATGGGAAATGGAGAGTCAACTCATGATTCTCATACTGATTTTTTTGGGCAACCCCCTTCCCATGATGGAAGTTCAGTAAATACTAGCCATCAATATCATCAACCCCCTTCCTATGATGGAAGTTCAGCAAATGCTAGCCATCAATATCATCATCCCCCTGCTTATGACGGAAGTTCAGTGAATACTAGCCATCAGTTTTATCAACCGGATCAATCCTCTTCATATGCTGGTAGTTCGGTGAATACCAGACATCAACATAAGAAGCAACCCGCATATATAGCTGACAGTTTCAGTTCACTGGATCAGGTTGTTTCTGCTTTAAGAGAAGCTGGTTTGGAATCTTCAAATCTTATAATTGGTATTGACTTCACTAAAAGCAACGAGTGGACAGGCAAGCATTCTTTCAACCACAAAAGCCTTCATTATATTGGAAACACTCCTAATCCATATGAGCAAGCGATCTCTATAATTGGCCATACTCTCTCTTCGTTTGATGAAGACAATCTGATACCATGTTTTGGATTTGGTGATGCATCTACACATGACCAGAATGTATTCAGCTTTTATCCTGATAATCGCTATTGCCATGGTTTTGAGGAAGTACTTTCGCGCTACCGAGAGATTGTGCCACACTTAAAATTGGCAGGTCCAACATCATTTGCCCCTGTAATCGACGCGGCTGTTGATATCGTGGAAAGAAGCAATGGTCAATACCATGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATTCAGGTACGCCACATGGAAAGTTTAGTCCACAAGAACAAGCAACTATTAATTCTATCATTGCTGCAAGTCACTATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGATGAAATGCAGCACTTTGATGATAGCATTACTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCTGAGAACAAAGATGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGATAACCCAAAACCTACAAGTCGCCAATGAAAAGTCAATAAGTTATCAACGTAAAAGGCCTTTTCCTCCGCCTAAGGAAGTAATAGATCGTGACAATGCAGTTCTAGCAGTTCCAAAATTTGAATCACTTGACCCATCAGCTCCACCAGCTGCGGTAGAATCAGCATGCCCTATTTGCTTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTCATACAACTTGCAAGGACTGTGGAGTGACATTATCTGCATGCCCTATGTGCCGGCAGCCAATTACAACTCGCCTGAGACTATACACTTGA 1335 0.4165 MGNGESTHDSHTDFFGQPPSHDGSSVNTSHQYHQPPSYDGSSANASHQYHHPPAYDGSSVNTSHQFYQPDQSSSYAGSSVNTRHQHKKQPAYIADSFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKHSFNHKSLHYIGNTPNPYEQAISIIGHTLSSFDEDNLIPCFGFGDASTHDQNVFSFYPDNRYCHGFEEVLSRYREIVPHLKLAGPTSFAPVIDAAVDIVERSNGQYHVLVIIADGQVTRNSGTPHGKFSPQEQATINSIIAASHYPLSIILVGVGDGPWDEMQHFDDSITQRLFDNFQFVNFTKIMSENKDASKKEAAFALAALMEIPIQYRITQNLQVANEKSISYQRKRPFPPPKEVIDRDNAVLAVPKFESLDPSAPPAAVESACPICLTNPKDMAFGCGHTTCKDCGVTLSACPMCRQPITTRLRLYT 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01289 444 ProSiteProfiles Zinc finger RING-type profile. 400 433 IPR001841 -
Spst3g01289 444 SMART VWA_4 114 317 IPR002035 -
Spst3g01289 444 SMART ring_2 400 432 IPR001841 -
Spst3g01289 444 CDD vWA_copine_like 93 343 IPR010734 -
Spst3g01289 444 PANTHER COPINE FAMILY PROTEIN 1 60 420 - -
Spst3g01289 444 Pfam Copine 139 351 IPR010734 -
Spst3g01289 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 444 IPR013083 -
Spst3g01289 444 MobiDBLite consensus disorder prediction 55 86 - -
Spst3g01289 444 Pfam Zinc finger, C3HC4 type (RING finger) 397 438 - -
Spst3g01289 444 SUPERFAMILY RING/U-box 393 439 - -
Spst3g01289 444 MobiDBLite consensus disorder prediction 1 48 - -
Spst3g01289 444 MobiDBLite consensus disorder prediction 1 87 - -
Spst3g01289 444 SUPERFAMILY vWA-like 115 298 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01289 Spst-Chr3 16314863 16320645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01289 K16280 - gmx:100791316 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01289 3 16314863 16320645 Spst3g01289 3 16314863 16320645 ECH