Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01193 ATAGCAGCGGGACCTCTTTGCTTCAACCTCAACCCTTTCACGACATCTAAAACCCTCACTCGCCAGGAGAGCCAAGTGTCCGCTATGGAAATCGACGCTCCGAAACCGACTAATTCCGATCAGATAGTTCCCAAATTCTCCATCAACGTGCTGCAGCTTTTGAAATCGGCGCAAATGCAGCATGGCTTGCGCCATGGAGATTACACTCGCTATAGGTTTCTTCATCTAATTCTGTATACAGCAGAGAGAGCTTGGAGTCATGCTATGGAGAAAAGGCAGCTTCCAAATGGTCCAAATGCACGTCAACGTATATATTTGATTGGCAGGTTGCGGAAAGCAGTAAAATGGGCTACATTGTTTTCACAATTGTGTGCGGTCAAGGCCGATTCTAGAACATCTTTGGAAGCTGAGGCTTATGAATCCTACATGAAAGGGAGTTTGTTGTTTGAGCAAGATCAAAATTGGGATGTGGCTTTAAAGAACTTCAAAAGTGCTAGGGCTGTATATGAGGAATTAGGGAAATATGGAGATTTGGATAACCAAGTTTTGTGTCGTGAGCGAGTTGAGGAGCTCGAACCTAGTATCCGATACTGCCTTCACAAAATTGGCCAGTCAAATCTACAGGCCTCTGAACTTTTACAAATTGGTGATGTGGAAGGTCCTGCATTAGACCTTTTTAAAGCTAAACTAGAGGCTGTCATGGCTGAGGCAAGATCTCAACAAGCTGCTTCCATGACAGAATTCCTTTGGCTTGGCCACAGATTTCCTATATCAAATGCTAAAACAAGGGTTGCCATCCTGAAAGCTCAGGAGCTGGAGAAAGATATACATGGTCCACTGGCAGACTCAATTCAAGCAGATAAAAGACTAGTTATTTTTGACAAAATCTTTTCTGCATATCATGAAGCCCGAGGTTTTATTCGGACTGATTTGGCCACTACAGGAAGTGCAGAAAGTGTGAAAGATGATTTGAATGGTCTTGATAAGGCTGTCAGTGCTGTCCTAGGAGAAAGAACCATTGAACGTAACCTCTTGTTGGTTAAGGTTGCAAAAAGCAAACTTGGAAAGCGGCATGATGATAAAAATGAAAAAGTTACCAAACCTGAAGAACTTGTTCGCTTATATGATCTCTTGCTTCAGAATACATCTGATCTATCTGATTTAGTCAGTTCTGGAAGGGATAAGAAACCAGAAGAAGTTAGCTTTGCTGAAGGGTGTTCATGCAAAAGTCTGGCTTTTCGAGCTCAAAGGTGCTTTTATGTTGCAAAGTCATACAGTGTGGCTGGGATGAGGGCTGAAGCATATGCATTGTACTGTCGCGCTCGCAATTTGGCAGATGATGCCTTAAAAAAGTTTCAAATGTTAGATAGTGATAATAAGACTATGATTAAAGAGTTGGAGGACTTGTGCCACGAGTGCCGATCTAACAGTTGTATTGAGCATGCGTTGGGGATCATGGAGGAAAAGAAGACTCAAGAGAATTTATCTGAAAAGGTCTCCAATATATCATTGACCGGAACTGAGCGGTTGGAGAAAGTCCTTCTTGAGAAACTCGAAGTTTACGAGTCTGCTGTGGGTGATTCAAATGTGAAGTGTACACCACGCATTACAGGCTTCCCCCCATCGTTCCAGGCAATATCCCGTAATCCTATTGTGCTGGATCTGGCTTATAACGTCATTGAATTCCCACATATTGAAAATAGGATGAAGAAGGATAGAAAAGCCAAGAGCGGGTTTATGAGTAGAATATTTGGATGA 1758 0.4261 IAAGPLCFNLNPFTTSKTLTRQESQVSAMEIDAPKPTNSDQIVPKFSINVLQLLKSAQMQHGLRHGDYTRYRFLHLILYTAERAWSHAMEKRQLPNGPNARQRIYLIGRLRKAVKWATLFSQLCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKNFKSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQASELLQIGDVEGPALDLFKAKLEAVMAEARSQQAASMTEFLWLGHRFPISNAKTRVAILKAQELEKDIHGPLADSIQADKRLVIFDKIFSAYHEARGFIRTDLATTGSAESVKDDLNGLDKAVSAVLGERTIERNLLLVKVAKSKLGKRHDDKNEKVTKPEELVRLYDLLLQNTSDLSDLVSSGRDKKPEEVSFAEGCSCKSLAFRAQRCFYVAKSYSVAGMRAEAYALYCRARNLADDALKKFQMLDSDNKTMIKELEDLCHECRSNSCIEHALGIMEEKKTQENLSEKVSNISLTGTERLEKVLLEKLEVYESAVGDSNVKCTPRITGFPPSFQAISRNPIVLDLAYNVIEFPHIENRMKKDRKAKSGFMSRIFG 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01193 585 PIRSF SRP68 72 580 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Spst3g01193 585 PIRSF SRP68 46 72 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Spst3g01193 585 CDD SRP68-RBD 49 200 IPR034652 GO:0003723
Spst3g01193 585 Gene3D - 73 204 IPR038253 GO:0003723
Spst3g01193 585 Gene3D - 45 72 IPR038253 GO:0003723
Spst3g01193 585 PANTHER SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN 72 584 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Spst3g01193 585 FunFam Signal recognition particle subunit SRP68 72 205 - -
Spst3g01193 585 Pfam RNA-binding signal recognition particle 68 72 560 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01193 K03107 - gmx:100816486 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01193 3 15430563 15438516 Spst3g01193 3 15430563 15438516 ECH