Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01166 ATGCCGGAAGAGGATTTGGTTGACATCAAGTTTAGGTTGTACGATGGCTCCGATATCGGACCCTTCAGGTACTCATCCGCCGCCACCGTCGATGTGCTTAAGCAGAGGATTGTCTCCGATTGGCCCAAAGGTAAAACAATCGTGCCAAAGTCAGCTAATGAAGTGAAATTGATTAATTCCGGTAAAATCTTGGAAAACCACAAGACTGTTGGTCAATGTAAAGTACTATTTGGTGAGATTGCAGGAAGTATTATAATGCATGTTGTTGTACAGCCATCTCTAGCAAAAACTAAAGCTGAAAAGAAGGTTGATGTTTCACCCAAGAAGGCTGTCTGTACTTGTTCCATATTATGA 354 0.4209 MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDVLKQRIVSDWPKGKTIVPKSANEVKLINSGKILENHKTVGQCKVLFGEIAGSIIMHVVVQPSLAKTKAEKKVDVSPKKAVCTCSIL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01166 117 Gene3D - 1 99 - -
Spst3g01166 117 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Spst3g01166 117 SUPERFAMILY Ubiquitin-like 2 96 IPR029071 -
Spst3g01166 117 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 116 IPR040015 -
Spst3g01166 117 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 115 IPR039540 -
Spst3g01166 117 CDD Ubl_MUBs_plant 6 92 - -
Spst3g01166 117 PIRSF MUB 1 117 IPR017000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01166 Spst-Chr3 15209751 15214485 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01166 - - vra:106768304 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01166 3 15209751 15214485 Spst3g01166 3 15209751 15214485 ECH