Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01152 ATGGATGGAGTTACCAAGCTACTGAACCTTGCAGTGCCTCCATTAACACTAATTCTCCTCTGTGTTTGCATGCTACCTTCGCTCATATTCAAGCAGCTTATGTATGTAAAAAAATCTGTTTACAAAGAAAACGTGGCAAACAAAGTTGTATTAATCACCGGAGCAGGCTCAGGGATTGGCGAGCAAATCGCTTACGAATATGCAAGGCGAGGGGCAAAGCTTTCCTTGGTTGACATTAGAGAGGAGAAACTTGTGGCAGTGGCTGATAAGACACGATCTCTGGGTTGTCCTGATGTTACCATCATTGGTGCTGATGTATCCAAGGTCCAAGACTGCAAACGCTTTGTTGATGAAACTGTGAAATACTTTGGAAGACTGGATCATCTGGTAAATAATGCGGGAATCTGTCCTAAGCCTGTAAAGGTGGAGAATTTGCGTGATATTTCTGAATACACTCAAGTTATGGATGTAAATTTCTGGGGAGCAGTTAATGGGACATTACATGCAATCCCACATCTGAAAATGAACAAAGGGAGGATCGTAGTGATTGCTTCAGTTTCCGGATGGTTCCCAGTACCAAGGATAGGTTTCTACAGTGCGAGTAAGGCAGCAGTAATAAACTTCTTTGAAAGTGTGAGATTGGAAGTTGGTGGGGACATTGGCATAACAATCGCCACGCCCGGTATGATCAAGACGGACCTTGCATTGAAGGCCATTAAACATGAAAAGGGTCTTGAGGGAAGAATTCCATTGGCGTCAAGTAGTGAATGTGCAAAAGCCATAGTTGAAGGTGCATGCAGGGGAGACATGTTCGTTACAAACCCATCCTGGTTCAAAATGTTGTTTCCTTGCAAGGTGCTTTATCCTCAGACGGTGGATTGGGCCTGTCGCTTGTTCTTTGGGTCTTCTCCAAACAAGTCTAACATGGAAGCCAATCACATGATGTCAGAAAATAAGATTCTCCGCTTCATCGTAAGATCACTTTTTAGAGAGAACGTAGCAGGAAAAGTGATACTAATCACTGGAGCATCCTCTGGCATAGGCGAGCACCTAGCATATGAGTATGCCAAATTGCTTGGATCCCCTGATGTGATCACCATCCCTGCTGATGTTTCAAGAGCCCAAGATTGCCAACGATTTGTTGAGTCAACAATCAACCACTTTGGACGATGTGGACCCTTTGCCATCGATATTGGTTTTGAGCCTCTAGGAATTGAGGCAGAGTACGTGCAACTTCCCAACACCAAAACAGCAGTGATCAGCTTATATGAGACTCTGAGAACTGAATTGGGAAGAAACATAGGAATAACTATAGTCACTCCAGGGTTGATCGAGTCAGAAATGTCTCAAGGGAAGATCCTAACCAAGGAAGGCAAGATGGTTTTTGATCAACAAATAACAGATATGCAAGTTAGTGTGATGCCCATAAGATCAGTGACAGAAGCTGCCAATGCAATTGTGAATAGCGTTTGCCGGGGGGGACTCTCACTAATTTCGAAGTCTCCCGAGAAGGATCCAGTTAGCAAGAAGGTCCTTGATCTTACAGGTTTAAAGAAATATGTGTATCCCAAGTCTGCGAGAAGTCCCAATATGAAACCATGTTAA 1605 0.4374 MDGVTKLLNLAVPPLTLILLCVCMLPSLIFKQLMYVKKSVYKENVANKVVLITGAGSGIGEQIAYEYARRGAKLSLVDIREEKLVAVADKTRSLGCPDVTIIGADVSKVQDCKRFVDETVKYFGRLDHLVNNAGICPKPVKVENLRDISEYTQVMDVNFWGAVNGTLHAIPHLKMNKGRIVVIASVSGWFPVPRIGFYSASKAAVINFFESVRLEVGGDIGITIATPGMIKTDLALKAIKHEKGLEGRIPLASSSECAKAIVEGACRGDMFVTNPSWFKMLFPCKVLYPQTVDWACRLFFGSSPNKSNMEANHMMSENKILRFIVRSLFRENVAGKVILITGASSGIGEHLAYEYAKLLGSPDVITIPADVSRAQDCQRFVESTINHFGRCGPFAIDIGFEPLGIEAEYVQLPNTKTAVISLYETLRTELGRNIGITIVTPGLIESEMSQGKILTKEGKMVFDQQITDMQVSVMPIRSVTEAANAIVNSVCRGGLSLISKSPEKDPVSKKVLDLTGLKKYVYPKSARSPNMKPC 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01152 534 Pfam short chain dehydrogenase 48 239 IPR002347 -
Spst3g01152 534 Gene3D - 400 508 - -
Spst3g01152 534 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
Spst3g01152 534 Gene3D - 325 399 - -
Spst3g01152 534 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Spst3g01152 534 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Spst3g01152 534 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Spst3g01152 534 FunFam Short-chain dehydrogenase reductase 37 275 - -
Spst3g01152 534 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 331 493 IPR036291 -
Spst3g01152 534 Gene3D - 30 302 - -
Spst3g01152 534 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 300 IPR036291 -
Spst3g01152 534 PANTHER RETINOL DEHYDROGENASE-RELATED 415 495 - -
Spst3g01152 534 PRINTS Glucose/ribitol dehydrogenase family signature 218 235 IPR002347 -
Spst3g01152 534 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Spst3g01152 534 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Spst3g01152 534 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Spst3g01152 534 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01152 Spst-Chr3 14947460 14957601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01152 43 251 Acyl Lipid Metabolism Gene Families AT1G24360 30.986 4.25e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01152 K22418 - qsa:O6P43_023546 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01152 3 14947460 14957601 Spst3g01152 3 14947460 14957601 ECH