Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01133 ATGAGTGCGAGAAAGGGATTGGTGTTGGTGATGGCTCTATGCTTCACCTCTGCTGCATATGCGGCAAGGTTTGACATCACAAACCGCTGCCCCTACACTGTGTGGGCCGCGTCTGTGCCGGTTGGCGGTGGCAGGCAGTTAAACTCTGGCCAATCTTGGTCCGTTGACGTGCCCGCAGGAACCAAGGCGGCCCGCATTTGGGCCCGAACCGGATGCAACTTCGACGGGTCGGGGCGCGGTAGATGCCAGACTGGTGACTGCGGTGGTGTACTGGAGTGCAGAGCATACGGTGTACCTCCGAACACCCTAGCGGAATACGCGCTGAACCAGTTCAGCAATTTGGACTTTATCGACATTTCCCTGGTGGACGGTTTCAACGTTCCGATGGAGTTTAGTCCAACGTCGGGTGGATGCACACGTGTCATACGATGCACTGCGGACATTAAGGGACAGTGTCCCGCTGAGCTCAAGACCGAAGGTGGTTGCAACAACCCTTGCACTGTCTACAAAACGAACCAGTACTGTTGCACTTCCGGAAGCTGTGGCCCCACTCCTCTCTCCCAATTCTTCAAGCAGCGATGCCCCGATGCTTACAGTTATCCCCAGGATGACAAGACAAGCTTATTCACTTGTCCCGGTGGAACCAACTACAAAGTTATCTTCTGTCCTTGA 672 0.5491 MSARKGLVLVMALCFTSAAYAARFDITNRCPYTVWAASVPVGGGRQLNSGQSWSVDVPAGTKAARIWARTGCNFDGSGRGRCQTGDCGGVLECRAYGVPPNTLAEYALNQFSNLDFIDISLVDGFNVPMEFSPTSGGCTRVIRCTADIKGQCPAELKTEGGCNNPCTVYKTNQYCCTSGSCGPTPLSQFFKQRCPDAYSYPQDDKTSLFTCPGGTNYKVIFCP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01133 223 ProSitePatterns Thaumatin family signature. 78 93 IPR017949 -
Spst3g01133 223 SUPERFAMILY Osmotin, thaumatin-like protein 22 223 IPR037176 -
Spst3g01133 223 FunFam Thaumatin I 22 223 - -
Spst3g01133 223 ProSiteProfiles Thaumatin family profile. 21 223 IPR001938 -
Spst3g01133 223 CDD TLP-P 24 223 - -
Spst3g01133 223 PIRSF PR5 2 223 IPR001938 -
Spst3g01133 223 Gene3D Thaumatin 22 223 IPR037176 -
Spst3g01133 223 PRINTS Pathogenesis-related protein signature 115 131 IPR001938 -
Spst3g01133 223 PRINTS Pathogenesis-related protein signature 65 76 IPR001938 -
Spst3g01133 223 PRINTS Pathogenesis-related protein signature 213 222 IPR001938 -
Spst3g01133 223 PRINTS Pathogenesis-related protein signature 78 107 IPR001938 -
Spst3g01133 223 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Spst3g01133 223 PRINTS Pathogenesis-related protein signature 43 52 IPR001938 -
Spst3g01133 223 PANTHER OS03G0233200 PROTEIN 11 223 IPR001938 -
Spst3g01133 223 SMART tha2 24 223 IPR001938 -
Spst3g01133 223 Pfam Thaumatin family 28 223 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01133 Spst-Chr3 14662128 14662799 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01133 7 223 Receptor kinase-like Gene Family AT5G38280 34.568 2.00e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01133 - - gmx:100301882 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01133 3 14662128 14662799 Spst3g01133 3 14662128 14662799 ECH
Spst2g00327 2 2544148 2544825 Spst3g01133 3 14662128 14662799 PCT