Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01118 ATGAGTAGTTTGGAAGGACCCATGACTTTCACTAGGAATGTCATGAGTGGAATGGAAAAGCTTTTCAACTTTGTGAAGTGCTTCAAAGAAACTGCCAACTATGTAGGGTCAGTTAGGCATATAAATAAGCTGCTCGAGACCATCCCCTTATTCCACATATTCACACAACACAAGTCTTTCTCTCAATCAAACACTGCAATGGCCAAGGTTTACCCTCAGTTACCCGCATCTCCTCAGACTCAGTGTCTCACATCCAAAAGAGAAACATACACTCTATGGTTGAAATCACTTGTCTTCCACTCCAATGGATGCACTGTCTATGACTCAAATGGTGGCATCGTTTATAGAGTTGACAACTATGACAGAAAGGGTAGAAGAGAAGTTAACCTCATGGATCTACGAGGCAAAGTTCTCTGCACCATAAAGAAGAGATTACTAGCTCTTGGATGCTGGGAAGGCCACAGATGCGTCAGTTCCGATTATGGTACCCGGGAACAACCATGGTTTCAAGTAAAAAGATGCAATCAAATGATCAAAGGTAAAGTAGCTTGCCAAATTTCTGTGGGGTGCCAAAAGTACAGCATAGTAAGAATCAGTGGCAAAGCAGAAGCATTTAGGATCGTGAACATTGATGGAGAAATAGTTGCCGAGGCAAAGCAAAAACACTCACCCTCAGGTGTTGTACTGAGTAACGATGTTCTAACGTTGGATTTGGCTGCTGGCACGGATCATTCTCTCATAATGGCTTTGATCACAGTATATGGATTGATATGCGGTATAATGTGA 786 0.4237 MSSLEGPMTFTRNVMSGMEKLFNFVKCFKETANYVGSVRHINKLLETIPLFHIFTQHKSFSQSNTAMAKVYPQLPASPQTQCLTSKRETYTLWLKSLVFHSNGCTVYDSNGGIVYRVDNYDRKGRREVNLMDLRGKVLCTIKKRLLALGCWEGHRCVSSDYGTREQPWFQVKRCNQMIKGKVACQISVGCQKYSIVRISGKAEAFRIVNIDGEIVAEAKQKHSPSGVVLSNDVLTLDLAAGTDHSLIMALITVYGLICGIM 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01118 261 PANTHER - 88 258 IPR007612 -
Spst3g01118 261 Pfam LURP-one-related 78 253 IPR007612 -
Spst3g01118 261 Gene3D - 79 259 IPR038595 -
Spst3g01118 261 SUPERFAMILY Tubby C-terminal domain-like 79 258 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01118 Spst-Chr3 14558178 14559513 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01118 - - pvu:PHAVU_002G287800g 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01118 3 14558178 14559513 Spst3g01118 3 14558178 14559513 ECH
Spst2g00321 2 2475947 2486610 Spst3g01118 3 14558178 14559513 PCT