Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01116 ATGGAGGAACCTCCAACTTCAGTTCCGGCGACAGCGTCGTGCTGGAGCAACGTGGTGAAGAAGCAACCTCCTCCACCACCGCAGCACAACGAACCTGTATTGGTGGAAACCACCGAATCCTCCAATGTCATCTCCGTCGCCGTCGTGGACGCCAACGCCGTCATTGAATCCGGCGAAAAACTCCACGGCCTCGCCGACAAGTTCATCTCCATCCCTGAAGTCATGAACGAAATCCGTGACCCCGTTTCCCGCCACAAACTCTCTTTCCTGCCCTTCTCCATTCAAACCATGGAACCCTCCCCCGAATCCATCAATAAAGTTGTCAAATTCGCTAGGGCTACTGGTGACCTACAAACTCTCTCTGATGTTGACATCAAGCTCATAGCTCTGACTTACACGTTGGAGGCTCAGATTCATGGGATCAAACATCTCAGGGATGCCCCTCCTCCTGTGCAAATGGTGAATGTGAAGAGGTTGCCTGAGAAGGACATGCCGGGGTGGGGTTCTAATGTGCCTAATTTGCAAGAGTGGGAGGCGTTGGAACAGGCAGAAGATGCTACGAATTTCAAGTCGAGAATCCTTCCCTTGCAGGATCTGAACTTAAACATTGTTTCTCCAGATGGTCACTCTGTGGATGGTTCAGTGGAGAGGACTAGTGAAGCTGACTCGGGGATTCAGGATGGCGATCAGGATGGTTTTATGAAGCCTAGGAAATATTTGCCTAAGAAAAAGGAGATAAACATTGAGGGAAAGACAATGGTGGCTGATGGAATTGATGCGTCGCAGGGAGAGTTTGATGACAATGCTGGTGATTGGATGCCAGCTGTCAGTCGGAGTACACATAGGAGATATTTGAGAAGGAAAGCTAGACGTGAGTATTATGAGTCCATATCCAGTCCTCTAGACGAGCAAGATTTGGAAGAAAATGTTGATGATAGTGTGGGTGAAGATGCTGGTGCTTTAAATCAGCAAGTTCGTGAAAGGGATGCTGAACAACATGTTGAAAATGCTGTGTCCGAGGATACTCAGGTGGTAAAAGAGAACAAAGACAATGAAAGTATATATGAGATTCTGCAACAAATGACGCTGGAAACAGTACCTGATGGCAATGCAAATGTGGTCACTAAACCATGTGACAGTGAGATAAATGCAGTTGATAACCAATCAAATCAATTGGACGGTGCAAGCCAGACCAGTGAAGCTGCTGACTTTTCGTATGCAGATGATGATGGTAGTGAGCAAAGTTGGATGGTTAGATCTTTGTCTGAATCAAGTGTAGCATGTGTAACCGGTGACTTTGCCATGCAAAATGTTCTTCTCCAAATGGGTTTGCGCCTACTGGCACCTGGAGGAACACAGATACACCAGCTGCACAGATGGATACTAAAGTGTCATGCCTGTTACACTGTGACTGCTGAGATTGGGAGGATTTTCTGTCCAAAGTGTGGAAATGGTGGCACCCTAAGGAAGGTAGCTGTCACAGTTAATGAAAATGGAATAGTGGTTGCAGCCCGCCGACCACGAGTTACATTACGTGGCACAAAGTTTTCATTGCCTTTACCTCAAGGTGGAAGGGATGCAGTTACGAAGAACCTCATTCTCCGTGAAGACCAACTTCCTCACAGGGTACTTTATCCTAAAACGAAGAAGAAAGCCAGCAAACAGGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACACAGATAAGAAATCTTCTTTCCAGCCTCCTATAAGGAAAGCAATGGCAGTTTTCGGTGGGAGGAGAAATCCAAATGACAATCACTACACACGCACGAAACATAAGTAG 1815 0.4683 MEEPPTSVPATASCWSNVVKKQPPPPPQHNEPVLVETTESSNVISVAVVDANAVIESGEKLHGLADKFISIPEVMNEIRDPVSRHKLSFLPFSIQTMEPSPESINKVVKFARATGDLQTLSDVDIKLIALTYTLEAQIHGIKHLRDAPPPVQMVNVKRLPEKDMPGWGSNVPNLQEWEALEQAEDATNFKSRILPLQDLNLNIVSPDGHSVDGSVERTSEADSGIQDGDQDGFMKPRKYLPKKKEINIEGKTMVADGIDASQGEFDDNAGDWMPAVSRSTHRRYLRRKARREYYESISSPLDEQDLEENVDDSVGEDAGALNQQVRERDAEQHVENAVSEDTQVVKENKDNESIYEILQQMTLETVPDGNANVVTKPCDSEINAVDNQSNQLDGASQTSEAADFSYADDDGSEQSWMVRSLSESSVACVTGDFAMQNVLLQMGLRLLAPGGTQIHQLHRWILKCHACYTVTAEIGRIFCPKCGNGGTLRKVAVTVNENGIVVAARRPRVTLRGTKFSLPLPQGGRDAVTKNLILREDQLPHRVLYPKTKKKASKQDDDFFTPDSVFSHHTDKKSSFQPPIRKAMAVFGGRRNPNDNHYTRTKHK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01116 604 Gene3D - 38 148 - -
Spst3g01116 604 MobiDBLite consensus disorder prediction 548 579 - -
Spst3g01116 604 MobiDBLite consensus disorder prediction 1 32 - -
Spst3g01116 604 Pfam Nin one binding (NOB1) Zn-ribbon like 454 524 IPR014881 -
Spst3g01116 604 FunFam 20S-pre-rRNA D-site endonuclease NOB1 38 158 - -
Spst3g01116 604 CDD PIN_Nob1-like 48 159 IPR033411 -
Spst3g01116 604 PIRSF Nob1 28 604 IPR017117 GO:0000469|GO:0004521|GO:0042274
Spst3g01116 604 PANTHER RNA-BINDING PROTEIN NOB1 34 602 IPR039907 -
Spst3g01116 604 Gene3D - 448 522 IPR036283 -
Spst3g01116 604 MobiDBLite consensus disorder prediction 548 576 - -
Spst3g01116 604 MobiDBLite consensus disorder prediction 212 236 - -
Spst3g01116 604 MobiDBLite consensus disorder prediction 585 604 - -
Spst3g01116 604 Pfam PIN domain of ribonuclease 48 134 IPR033411 -
Spst3g01116 604 SUPERFAMILY NOB1 zinc finger-like 454 517 IPR036283 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01116 K11883 - gmx:100785714 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01116 3 14541381 14543995 Spst3g01116 3 14541381 14543995 ECH