Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01115 ATGGAAGAGGAGAGCAAAATAACAAAGGGAAAATATGCTGCTGATATTTCCTCCATTAAAGAAGCACATGCCCGAATCAAATCATTGGTTCATAAAACTCCGCTTCTATCCTCCACCTCGCTGAATGTTATGTCAGGAAGGCTGCTCTACTTTAAGTGTGAATGTTTACAAAAGGGGGGAGCTTTTAAATTTAGAGGTGCCTGCAATGCTGTGTTCTCTCTCAGTGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCTGCAGCATTGGCTTTAGCCGCAAAACTTCGGGGGATCCCTTCATATATTGTTATTCCAAAAAATGCCCCAACTTGTAAAATTGAGAATGTAAAGCGGTATGGTGGTCAGGTTGTGTGGTCCGAGGCCTCTGTTCAATCAAGGGAAGAAGCTGCAGACAAAGTGTGGCAGGAAACTGGTGCTATCTTTATACATCCGTATAATGATGGTCGCATATTAAGTGGCCAGGGTACCATATCCTTGGAGATTCTGGAGCAAGCCCCACATATAGATACGCTCGTGGTACCCATAAGTGGTGGTGGTTTGATATCAGGAATTGCATTGGCTGCCAAGTCCATCAACCCAGCTATTCGTATTTTAGCTGCTGAACCTAAAGGGGCTGATGATGCGGCACAATCTAAAGCAGCTGGCAGGATAATAAGATTGCCCGAGACAAATACTATAGCTGACGGTCTTCGAGCATTTCTTGGAGATTTCACATGGCCTGTAGTACGAGATCTTGTTGAGGACATTATAACTGTTGAAGACAGTGAAATAATAAAAGCAATGAAACTGTGTTTTGAAATTCTTAAGGTGGTCGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACCTTCCAGAAGAATCCTTCTTGGAAGGAATGCAACCATATAGGAATAGTAGTTTCAGGAGGCAATTGTAAACCATATCATTTGTATGTTCCACCTCTGATTCTGCAATATACAAGGATATTTGTTCGTTATTTTCTCTGCATACTTGTCATTGAGTTTATTGTTCTCATTTTCCCATCTCTATTGCTTCCCTCGCTTTCCCTTCATTCACATTTCGCAGGGCGCTTCTTTCTCATTGCTGGCAAAATGGTATGCATTTCTTTCTCAATTTTCCACACTGCAAATGCAGCGTCCGGTATGGCTGTGCATGATGATTGCAAACTGAAGTTTCAAGAGCTTAAATCAAAGAGGAGTTACAGGTTCATTGTGTTCAAAATTGAAGAACAGCAAGTAGTAGTTGACAAATTAGGGGGCCCCTCGCAAAGTTATGAGGACTTTATGGCCAGTTTTCCTGCTAATGAATGTCGTTATGCTGTCTATGATTTTGACTTCACAACTAATGAGAACTGCCAGAAAAGCAAGATCATCTTCGTTGCATGGTCACCAGATTCCTCAAAGGTGAGGATGAAGATGGTGTATGCTAGTTCCAAGGATAGATTCAAGAGGGAGTTGGATGGCATTCAGGTTGATATGCAAGCAACTGATCCAAGTGAGATGAGCTTGGACCTTGTGAAAGCACGAGCCATCTAA 1587 0.4247 MEEESKITKGKYAADISSIKEAHARIKSLVHKTPLLSSTSLNVMSGRLLYFKCECLQKGGAFKFRGACNAVFSLSDEDASKGVVTHSSGNHAAALALAAKLRGIPSYIVIPKNAPTCKIENVKRYGGQVVWSEASVQSREEAADKVWQETGAIFIHPYNDGRILSGQGTISLEILEQAPHIDTLVVPISGGGLISGIALAAKSINPAIRILAAEPKGADDAAQSKAAGRIIRLPETNTIADGLRAFLGDFTWPVVRDLVEDIITVEDSEIIKAMKLCFEILKVVVEPSGAIGLAAVLSDTFQKNPSWKECNHIGIVVSGGNCKPYHLYVPPLILQYTRIFVRYFLCILVIEFIVLIFPSLLLPSLSLHSHFAGRFFLIAGKMVCISFSIFHTANAASGMAVHDDCKLKFQELKSKRSYRFIVFKIEEQQVVVDKLGGPSQSYEDFMASFPANECRYAVYDFDFTTNENCQKSKIIFVAWSPDSSKVRMKMVYASSKDRFKRELDGIQVDMQATDPSEMSLDLVKARAI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01115 528 CDD ADF_cofilin_like 397 527 IPR017904 GO:0015629|GO:0030042
Spst3g01115 528 SMART adf_2 403 528 IPR002108 GO:0003779
Spst3g01115 528 SUPERFAMILY Actin depolymerizing proteins 393 526 - -
Spst3g01115 528 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 16 326 IPR036052 -
Spst3g01115 528 CDD Thr-dehyd 16 321 - -
Spst3g01115 528 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 IPR000634 GO:0006520|GO:0030170
Spst3g01115 528 Pfam Pyridoxal-phosphate dependent enzyme 29 317 IPR001926 -
Spst3g01115 528 ProSiteProfiles ADF-H domain profile. 396 528 IPR002108 GO:0003779
Spst3g01115 528 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 4 323 - -
Spst3g01115 528 Gene3D - 62 158 IPR036052 -
Spst3g01115 528 FunFam Actin-depolymerizing factor 2 392 528 - -
Spst3g01115 528 Pfam Cofilin/tropomyosin-type actin-binding protein 405 525 IPR002108 GO:0003779
Spst3g01115 528 Gene3D Severin 388 528 IPR029006 -
Spst3g01115 528 Gene3D - 22 322 IPR036052 -
Spst3g01115 528 FunFam L-threonine dehydratase catabolic TdcB 142 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01115 Spst-Chr3 14533666 14539321 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01115 K12235 - gmx:100799758 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01115 3 14533666 14539321 Spst3g01115 3 14533666 14539321 ECH