Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01092 ATGGCGTTATCATTTCTCCGTGTTCCACGCTTGCTTTCTCCAACTCCTACACCTGGAATTACAACTACAACTTCAACTACAACATCGAGTGTAGTCAAGTTTCAACACTCTCGCAAGCCTTCTAAATTCACACCCTTCTTTCGCTCTTCACTTTTATGTCCCTTGGTTCGGGCCATTGGGCCTGATGGAAGGTACTACCCAAGTCCAGGCGACGACGACCCACCGGAGGCCGCGGAGGACTCCTCCCACGGCTTCTCCACCTTCCAACAAATCCATATCCAATCGGAACGCGCGCGCCAAATCGAAGAGGAAGACTACAAGAAAAACCAGGCCACTTACCTCGCCGCCATCGCCGACGTTGAAGACGCCCCCGATAACGTCGACTTCGACACCTCCGGAGACGACCTATTCGGCGATATTGACAAGGCCATCGCGCTCAAACGCAAGGAGTTCGTCTCCCAAGGCCTTCTCGAACCTAATCCTCCCAAACAAGACCAGCTCGCGTCCGCCGCTGCTATGGATGAACTTCAGGCGGATGAGGCCGGCGATTTGGAGGAAATTGAACGGCTCCAGGGACTTGCCGGTAACGGTATCGGTACCGGAGGTTCGAGTGAAACTCCGTTTGAATTAGATTTTGACACTTATGGGAAAAGTAAGGTTAGGATTGTGGACGGAAAGTTTAAGATGAGTTTGGCTGAGCTTTTAGACGAGAGTAAGGTCGTACCGGTGTCGGTTTCTGGTGATTTAGAAGTCGAAATCACCGGAATTCAGCACGATTCGCGGCTCGTTACTTCTGGTGATTTGTTTGTGTGTTGCGTTGGGCGAAAAACCGATGGGCATTTGTTTCTGTCTGAGGCTGACAAGAGAGGTGCCGTTGCGGTTGTGGCTAGTAAAGAGGTTGATATTGAGGATACTTTGGGGTGTAAGGCTTTGGTTATCGTGGAAGATACTAATGCTGTTCTTCCTGCTTTGGCCGCGTCGTTTTATAAACATCCTTCCACTAAAATGGCTGTGATTGGGATAACTGGAACTTATGGCAAAACAACCACCACCTGTTTGATTAAAAGTTTGTATGAAGCCATGGGGCTGCGCACTGGTATGTTGAACTCGGTTGCCTCTTATGTCCACGGGAAAAATAAGTTGGAGTTGGGTGGCGCGGTGCCGGATGTTGTCTTGGTTCAGAATTTGATGGCGAAGATGATTCACAATGGGACTGAGGCGGTTGTCATGGAGGTTGGTTCTCATGGGCTGGGGGAGGGGAAGTATGATGAGGTTGATTTTGATATCGCGGTTTTCACTAATTTGAGTCAGGATAAGGAGGAGGATAGAGATGCGCAGGCTAAGTTATTCTCGAGAATGGTGGATCCTCAAAGGCACAGGAAGGTTGTTAACACTGATGATCCCAATGCTCATTTTTTTGTATCACAAGGAAGCCAGGAGGTTCCTGTTGTGACGTTTGCGATGGAGAATAAGGATGCAGATGTTCATCCCTTGAAGTTTGAACTTTCTTTGTTTGAGACTCAGGTGTTGGTTAATACTCCCACAGGTATACTGGAGATTTCTTCAGGTTTGCTTGGGAAGCATAATATTTACAACATTCTTGCGGCTGTGGCGGTTGGGATTGCTGTTGGGGCACCCTTGGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCGGTTCCTGGAAGGTGTGAATTGATTGATGAGGAACAGGCGTTTGGGGTGATAGTGGACCATGCCAGTACTCCTGATTCATTGTCTAGATTGCTTGATTCTGTAAGAGAGTTAGGACCTCGCAGGATTATTACTGTAATTGGATGCTGTGGTGAGGGCGAAAGGGGTAAGAGACCCGCTATGACCAAGATAGCAACAGATAAAAGTGAAGTCACTATGCTGACATCTGACAATCCCAAGAATGAAGACCCATTGGATATATTGGATGATATGTTATCTGGGGTAGGATGGTCAATGCAGGACTACCTCAAATACGGAGAGAATGACTATTATCCACCTCTTCCAAATGGTCATAGACTTTTTCTCCATGACATTAGGAGAGTGGCTGTGCGAGCTGCGGTTGCAATGGGAGAGGAGGGCGATGTGGTTGTGGTTACTGGCAAAGGCCATGAAACATATCAAATAGAAGCTGATAAGAAGGATTTCTTTGATGATCGAGAAGAGTGCCGAGAGGCATTGCAGTATGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGAGGTTACCAGAGAGCCATTGA 2268 0.4766 MALSFLRVPRLLSPTPTPGITTTTSTTTSSVVKFQHSRKPSKFTPFFRSSLLCPLVRAIGPDGRYYPSPGDDDPPEAAEDSSHGFSTFQQIHIQSERARQIEEEDYKKNQATYLAAIADVEDAPDNVDFDTSGDDLFGDIDKAIALKRKEFVSQGLLEPNPPKQDQLASAAAMDELQADEAGDLEEIERLQGLAGNGIGTGGSSETPFELDFDTYGKSKVRIVDGKFKMSLAELLDESKVVPVSVSGDLEVEITGIQHDSRLVTSGDLFVCCVGRKTDGHLFLSEADKRGAVAVVASKEVDIEDTLGCKALVIVEDTNAVLPALAASFYKHPSTKMAVIGITGTYGKTTTTCLIKSLYEAMGLRTGMLNSVASYVHGKNKLELGGAVPDVVLVQNLMAKMIHNGTEAVVMEVGSHGLGEGKYDEVDFDIAVFTNLSQDKEEDRDAQAKLFSRMVDPQRHRKVVNTDDPNAHFFVSQGSQEVPVVTFAMENKDADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDHASTPDSLSRLLDSVRELGPRRIITVIGCCGEGERGKRPAMTKIATDKSEVTMLTSDNPKNEDPLDILDDMLSGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVTGKGHETYQIEADKKDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01092 755 Pfam Mur ligase middle domain 341 539 IPR013221 GO:0005524|GO:0009058|GO:0016881
Spst3g01092 755 Gene3D - 566 742 IPR036615 GO:0009058|GO:0016881
Spst3g01092 755 SUPERFAMILY MurD-like peptide ligases, catalytic domain 312 571 IPR036565 GO:0005524|GO:0009058
Spst3g01092 755 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 560 732 IPR036615 GO:0009058|GO:0016881
Spst3g01092 755 Gene3D - 230 330 - -
Spst3g01092 755 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 229 731 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Spst3g01092 755 MobiDBLite consensus disorder prediction 63 84 - -
Spst3g01092 755 SUPERFAMILY MurE/MurF N-terminal domain 229 332 IPR035911 -
Spst3g01092 755 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 565 738 - -
Spst3g01092 755 Pfam Mur ligase family, glutamate ligase domain 560 643 IPR004101 GO:0009058|GO:0016881
Spst3g01092 755 Pfam Mur ligase family, catalytic domain 252 329 IPR000713 GO:0009058|GO:0016881
Spst3g01092 755 Gene3D - 332 563 IPR036565 GO:0005524|GO:0009058
Spst3g01092 755 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 251 732 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Spst3g01092 755 PANTHER MUR LIGASE FAMILY MEMBER 184 741 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01092 - - gmx:100776096 1252.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01092 3 14373496 14377302 Spst3g01092 3 14373496 14377302 ECH