Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01083 ATGTCTTCCCCGAGCAAACGCCGAGACATGGACCTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAACGACGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCTAAAGACAGTCCCTATGAGGGTGGTGTGTGGAAGATAAGGGTGGAGCTACCTGATGCTTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAATAAAATTTTTCATCCTAATGTTGATGAAATGTCTGGTTCTGTTTGCTTAGATGTTATTAACCAGACTTGGAGTCCCATGTTTGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCTCAACTTCTTCTGTATCCCAATGCATCAGATCCATTGAATGGTGATGCTGCTGCCTTGATGATCCGAGATCATGCTACATATGAACAAAGAGTCAAAGAATATTGTGAGAAGTTTGCCAAGCCAGAAGACATTGGAGCAGTAGAGGAGAAAGATTCTAGTGAGGATGAGCTGAGTGAAGATGATTATGCCTCTAGTGATGATGCCATTGTCGGCCAACCTGATCCTTAG 552 0.4293 MSSPSKRRDMDLMKLMMSDYKVEMINDGMQEFFVEFHGPKDSPYEGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNASDPLNGDAAALMIRDHATYEQRVKEYCEKFAKPEDIGAVEEKDSSEDELSEDDYASSDDAIVGQPDP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01083 183 CDD UBCc 10 143 IPR000608 -
Spst3g01083 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Spst3g01083 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 136 - -
Spst3g01083 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Spst3g01083 183 MobiDBLite consensus disorder prediction 156 171 - -
Spst3g01083 183 SMART ubc_7 4 148 - -
Spst3g01083 183 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Spst3g01083 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Spst3g01083 183 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Spst3g01083 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Spst3g01083 183 MobiDBLite consensus disorder prediction 151 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01083 Spst-Chr3 14258626 14261359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01083 3 117 Miscellaneous Gene Families AT3G17000 24.390 2.65e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01083 K10576 - gmx:100791133 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01083 3 14258626 14261359 Spst3g01083 3 14258626 14261359 ECH