Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01072 ATGAGTAGAGGTGAAAGAAGTGGTGGTGGGCAAAGCTCCTTGAATTACCTCTTTGGGTCGGAAGAGAAGCCAAAGCCTTCTTCTCCTCCAAAGACAGTTTCATATTCATTGCCACCTTATGGCATTGAAATGGATAAGGATAATCCTCCTATCGCTCATCTTCCCCCTTCCTCTGACCCTTCTCAGGGCCAACACTTGGGAAGCGTTCTGACTAATCGTCCCTCCACAAAAGTCAAATCGGTTCCTGGTGGACACTCATCGCTTGGATACTTGTTCGGAGACAACTTTGAATTTCATGGGTTGCAAAGTTCTGGTCTGTTTTTCTTGTTACAAGTTCTTAATCAAGGGAGGGTGTCATGTGAGCGGCTTGTTTCTGCGATTAGAAACGCAGTCACGAGATTGGCCATGCAAGGTGAAATTTGGCAGTTCATGGATGTGTTGTTCTGGTTATGTGTTCTTTTGGTTGCTTTGCCAAACGTGGCTGTAGTGGAGAGCCGCAAAGCTCCAGTTCTGGACTACTTTGAGTACTGCGCTATGAGCTGCAGAGCTTATAGTGCCTCAGTGGAAGAATTTGGAGGGGTTGGTGATGGAACAACTTTGAACACAAGAGCCTTTCAGGAAGCCATATATCACCTGAGTCAGTATGCATCAAGTGGAGGGTCTCAACTTTATGTTCCCCCAGGAAGATGGTTAACTGGCAGCTTCAATCTCACGAGCCATTTCACTTTATTCCTACACAAGGATGCTGTGATTCTTGCCTCTCAGGATGAAAATGACTGGCCCGTAATTGATCCCTTGCCATCTTATGGTAGAGGGAGGGACACCCAAGGTGGAAGGTTTAGCAGCCTAATTTTTGGAACCAACCTCACTGATGTAATCGTAACTGGGAACAATGGCACATTAGATGGACAAGGTGATCTGTGGTGGCAAAAATTCCACAAGGGGGAGCTCAATTATACCCGGCCTTACCTGATTGAAATCATGTACTCAGATAATGTTCAGATATCCAATCTCACTTTGGTGAACTCTCCATCGTGGAATGTTCATCCAGTATACAGCAGCAACGTTGTTGTTCAAGGGCTCACAATTCTTGCTCCTGTGACATCTTCAAATACAGATGGAATCAACCCTGACTCTTGCACAAACACAAGAATTGAAGACTGTTACATTGTATCTGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACAAAGCAGCTTGTAATCAGAAGACTCACTTGTATTTCTCCATTCAGTGCTGTGATTGCTTTAGGAAGTGAGATGTCTGGTGGGATTCAAGATGTTAGGGCTGAGGACATTGTAGCCATCAATTCAGAATCAGGGGTTAGAATCAAAACTGCTGTAGGAAGAGGAGGATATGTTAAGGACATATATGTTAGAAGAATGACCATGAAAACCATGAAATGGGCATTTTGGATGACAGGAAATTATGGGTCTCATGCTGATGACAAATATGATCCTAATGCACTTCCTGTGATTCAGAACATAAACTACCGCGATATGGTTGCTGAGAATGTCACTATGGCTGCGAGGTTGGAGGGTATCTCTGGTGACCCTTTTACTGGAATCTGCATATCTAATGTAACCATTCAACTGGCAAAGAAGGCTAAAAAAGTTCCATGGACTTGCACTGATGTTGATGGGATTTCAAGCGATGTCACTCCTGCACCATGTAATCTGTTGCCAGACCACGGAGAAGAGAAAATTGGAACATGTACCTTCCCAGAAGAAAGTTTGCCCATCGAAGATGTCCGGGTTCAAACGTGCACTTATAGTAGGAATTTATGA 1839 0.4432 MSRGERSGGGQSSLNYLFGSEEKPKPSSPPKTVSYSLPPYGIEMDKDNPPIAHLPPSSDPSQGQHLGSVLTNRPSTKVKSVPGGHSSLGYLFGDNFEFHGLQSSGLFFLLQVLNQGRVSCERLVSAIRNAVTRLAMQGEIWQFMDVLFWLCVLLVALPNVAVVESRKAPVLDYFEYCAMSCRAYSASVEEFGGVGDGTTLNTRAFQEAIYHLSQYASSGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILASQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIVTGNNGTLDGQGDLWWQKFHKGELNYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPVYSSNVVVQGLTILAPVTSSNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHADDKYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQLAKKAKKVPWTCTDVDGISSDVTPAPCNLLPDHGEEKIGTCTFPEESLPIEDVRVQTCTYSRNL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01072 612 MobiDBLite consensus disorder prediction 1 79 - -
Spst3g01072 612 Pfam Glycosyl hydrolases family 28 281 563 IPR000743 GO:0004650|GO:0005975
Spst3g01072 612 Gene3D - 175 568 IPR012334 -
Spst3g01072 612 MobiDBLite consensus disorder prediction 1 18 - -
Spst3g01072 612 FunFam Glycoside hydrolase family 28 protein 172 569 - -
Spst3g01072 612 MobiDBLite consensus disorder prediction 57 79 - -
Spst3g01072 612 PANTHER PECTIN LYASE-RELATED 154 600 - -
Spst3g01072 612 SUPERFAMILY Pectin lyase-like 177 580 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01072 Spst-Chr3 14078136 14083605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01072 174 610 Glycoside Hydrolase AT4G23500 75.973 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01072 - - gmx:100785841 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g00290 2 2207279 2207678 Spst3g01072 3 14078136 14083605 PCT