Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g01013 ATGGAAGAAGGACAATCAAATGGAAGGAACATGGGTTTTCCATTGAAACCAAACTTTGCAGGCTGGGAAATGAGAATCGTTACCAGTCAAACATTGTTGAAACTTTTGCAACCCTCCACCTCCCCACTTTCCAATCCCGGAACTCCCTCTCCTCCTCTTTACTTGAAACTTCTTTCTTTTCCCAAGGATTCCCTCCTAACTTGGTGGGATTATCCGAAGTTTCAGTTGCTTCCACTCACCCACATTGCCATTTCCTGTGTCACTCCCCACATGGAAAAGCTTCTCTGCATGTCCCCTTTCCTTCTTCTCCTTCTTCTGTCCCCTACTTTTGCCTTTGCTGGCCATGATTATGGTCAAGCTCTCAGCAAGAGCCTTCTTTTCTTTGAAGCTCAGAGATCTGGCTTCCTTCCCCACAATCAGAGAGTCACATGGAGAGCACATTCTGGTTTGCAAGACGGCAAAGCTAGCGGGGTGGATCTTGTTGGAGGGTACTACGATGCCGGGGACAATGTGAAGTTCGGGTTACCCATGGCGTTTACCGTTACGATGATTTCGTGGAGCATCATTGAATACGGCAAACAAATGGCTGCTAGCGGTGAGCTTGGTCACGCCATGGAAGCAGTTAAGTGGGGCACGGACTACTTCATCAAAGCACACCCTCAGGCCAACGTTCTCTACGGAGAGGTGGGAGACGGAAACACTGACCATTACTGCTGGCAAAGGCCAGAGGACATGACAACGGACCGTCACGGTTACAAGATCGATCCCAACAATCCCGGGTCGGATCTGGCCGGAGAAACCGCGGCTGCCATGGCAGCCGCATCTATTGTTTTCCGACGCTCTAACCCTGCTTATTCGCACGAACTTCTCAGCCATGCGTACCAGTTGTTCGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTTGCCCAGAAGTACTACAGATCGATCAGTGGCTACAATGATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAATCAGTATTACTTGGATTACCTTGGAAGAAACGGTGATTCCATGGGTGGAACTGGTTGGAGCATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGGGTTCAGACACTGGTTGCCAAGTTCCTGATGCAGGGCAAAGCTGCTCATCATGCACCAGTCTTCGAGAGATATCAACAGAAGGCTGAATCCTTCATGTGCTCATGCCTTGGAAAGGGTTCTCGCAATGTTCAGAAAACTCCTGGTGGCCTCATCTTCCGCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCATTTTTAGCCACTGTCTATTCTGACTACCTTGCTTCTTCTGGTAGAAACTTGAGATGTAATTCAGGAAATGTTGCTCCTGCTGAGCTTCTCTCCCTTGCAAAGTCTCAGGTGGACTACCTTCTTGGGGACAACCCCAGAGCAACTAGTTACATGGTGGGCTATGGAAGCAACTTCCCTCAAAGGGTTCATCACCGAGGTTCATCGATTGTTTCTGTCAAGGTTAACCCATCATTTGTCAGCTGCCGTGGAGGTTATGACACTTGGTTTAGCAGCAAAAAGAGTGACCCCAACCTACTCACTGGTGCTCTTGTTGGTGGACCTGATGCATATGATGACTTCGCTGATGAAAGAGATAACTATGAGCAGACAGAGCCAGCAACCTATAACAATGCTCCTCTCGTTGGTATTCTAGCCCGTCTCCATGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGTTGCTGTGCCAGCTCCTAAGCCTGTTGCTACCAAGCCTCAACCATCCCCCAATACCAAGACAACTCCATCTCCAGCTTCATGGTCTGTCCCAATTTCTATTGAACAGAAAATGACCACCTCATGGGTTGCCAATGGAAAAACTTATTACAGATACTCAACAGTGGTGACCAACAAATCTAACAAGAGTCTCAATTCTCTAAATCTTTCAATCTCCAAGCTTTATGGTCCAATCTGGGGTCTCACAAAGTCTGGTGATTCGTACACATTCCCATCATGGCTCAGCTCATTAGAAGCAGGCAAAAGCCTTGAATTTGTGTACATCCATTCTACTTCTCCAGCAGATGTCTCTGTGGCTAACTACGTGTTGGCCTGA 2148 0.4781 MEEGQSNGRNMGFPLKPNFAGWEMRIVTSQTLLKLLQPSTSPLSNPGTPSPPLYLKLLSFPKDSLLTWWDYPKFQLLPLTHIAISCVTPHMEKLLCMSPFLLLLLLSPTFAFAGHDYGQALSKSLLFFEAQRSGFLPHNQRVTWRAHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMISWSIIEYGKQMAASGELGHAMEAVKWGTDYFIKAHPQANVLYGEVGDGNTDHYCWQRPEDMTTDRHGYKIDPNNPGSDLAGETAAAMAAASIVFRRSNPAYSHELLSHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWSMTEFGWDVKYAGVQTLVAKFLMQGKAAHHAPVFERYQQKAESFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSGRNLRCNSGNVAPAELLSLAKSQVDYLLGDNPRATSYMVGYGSNFPQRVHHRGSSIVSVKVNPSFVSCRGGYDTWFSSKKSDPNLLTGALVGGPDAYDDFADERDNYEQTEPATYNNAPLVGILARLHGGHGGYNQLLPVAVPAPKPVATKPQPSPNTKTTPSPASWSVPISIEQKMTTSWVANGKTYYRYSTVVTNKSNKSLNSLNLSISKLYGPIWGLTKSGDSYTFPSWLSSLEAGKSLEFVYIHSTSPADVSVANYVLA 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g01013 715 SMART CBM49_2 623 703 IPR019028 GO:0030246
Spst3g01013 715 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 478 504 IPR018221 -
Spst3g01013 715 FunFam Endoglucanase 113 584 - -
Spst3g01013 715 Pfam Glycosyl hydrolase family 9 117 576 IPR001701 GO:0004553|GO:0005975
Spst3g01013 715 MobiDBLite consensus disorder prediction 597 619 - -
Spst3g01013 715 Gene3D - 114 582 IPR012341 GO:0005975
Spst3g01013 715 Pfam Carbohydrate binding domain CBM49 623 700 IPR019028 GO:0030246
Spst3g01013 715 MobiDBLite consensus disorder prediction 605 619 - -
Spst3g01013 715 PANTHER ENDO-1,4-BETA-GLUCANASE 103 580 - -
Spst3g01013 715 SUPERFAMILY Six-hairpin glycosidases 114 591 IPR008928 GO:0005975
Spst3g01013 715 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 552 570 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g01013 Spst-Chr3 13519206 13525227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g01013 91 715 Glycoside Hydrolase AT1G64390 78.720 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g01013 K01179 - gmx:100801949 1168.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g01013 3 13519206 13525227 Spst3g01013 3 13519206 13525227 ECH