Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00997 ATGGGGTGTTGTTGCACCAAACGGCGACTTGATCATGAAGATCCAGCACTTCTTGCTTCCCAAACCTATTTTAAAAGTTCTGAAATTGAAGCATTGTATGATCTGTTCAAGAAATTAAGCAGCTCCATGGTGGACGATGGTGTTATCAGCAAAGAAGAGTTTCAGCTTGGCTTATTTGGAAGCTGCAAGAAACAGAGCCTCTTTACTGATAGGTTATTTCAATTATTTGACTCAAAAAATGATGGGGTGATAGAATTTGGAGAGTTCATTCGAGGTCTAAGTGTCTTCCACCCAGCAGCACCACAAGCACAGAAAACAGACTTTGCATTTCGACTCTATGATGTATGTCAAAGAGGCTTTATTGAACGTGACGAGGTAAGAGAGATGATATTGGCAGTACTAAATGAATCGGATTTGGTTCTGTCTCATGACATAATTGAGGTCATAATTGATAAGACCTTTAAAGAAGCAGACTCGAAAGGAGATGGAAGGATTGATCAAGAGGAGTGGCAAGAATTAGTTGGTCGAAACCCATCCATATTGAGGAATATGACTATTCCCTATTTGAAGGATCTTAATATAGAGTTTCCTGGTTTTAAACAAGCATTAGCCATTGAAGACTGTAGAAGGAGCTCATCCCCTGAGAAAGACAAGAGTCCGTCCCTCCTTAGAAGGACAATTTCAACAGTTGTCTCAAAAAATGCAATTTCATCAAAATGTGAGTATACATACACAGCGACCAAAGTAAAGGAGGAAGGAATCGCCGTTAAGGTTGACGGCGAGAGGTAG 789 0.403 MGCCCTKRRLDHEDPALLASQTYFKSSEIEALYDLFKKLSSSMVDDGVISKEEFQLGLFGSCKKQSLFTDRLFQLFDSKNDGVIEFGEFIRGLSVFHPAAPQAQKTDFAFRLYDVCQRGFIERDEVREMILAVLNESDLVLSHDIIEVIIDKTFKEADSKGDGRIDQEEWQELVGRNPSILRNMTIPYLKDLNIEFPGFKQALAIEDCRRSSSPEKDKSPSLLRRTISTVVSKNAISSKCEYTYTATKVKEEGIAVKVDGER 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00997 262 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Spst3g00997 262 SMART efh_1 68 96 IPR002048 GO:0005509
Spst3g00997 262 SMART efh_1 105 133 IPR002048 GO:0005509
Spst3g00997 262 SMART efh_1 149 177 IPR002048 GO:0005509
Spst3g00997 262 SUPERFAMILY EF-hand 16 191 IPR011992 -
Spst3g00997 262 CDD EFh 105 174 IPR002048 GO:0005509
Spst3g00997 262 PRINTS Recoverin family signature 165 185 - -
Spst3g00997 262 PRINTS Recoverin family signature 119 137 - -
Spst3g00997 262 PRINTS Recoverin family signature 72 93 - -
Spst3g00997 262 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Spst3g00997 262 FunFam calcineurin B-like protein 3 14 207 - -
Spst3g00997 262 Pfam EF-hand domain pair 107 173 IPR002048 GO:0005509
Spst3g00997 262 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Spst3g00997 262 Gene3D - 14 208 - -
Spst3g00997 262 Pfam EF-hand domain pair 46 91 IPR002048 GO:0005509
Spst3g00997 262 PANTHER CALCINEURIN B 2 201 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00997 Spst-Chr3 13386274 13392369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00997 14 208 EF-hand Containing Proteins AT4G26570 59.296 2.00e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00997 K06268 - vra:106766823 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00997 3 13386274 13392369 Spst3g00997 3 13386274 13392369 ECH