Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00995 ATGAGCTGCTTTGGCTTGAAGAAAGCTAGACCAAAGAATAAGCTAGAACTATCCACCATTCTTGCTTCGGAAACATCCTTTACTGTGAATGAGATCGAGGCTTTGCTTTGCACGTTTAAGAAACTAAGTAGTGCAATTATTGATGATGGCGTCATTCACAAGGCGATGCTTAGTGTTGCTTACAATTTAAGAAACTTTATTCCTGTTACAAGGAGTGAGGTATTTGATATGTTTGACACCAAGCGTGATGGAGTGATCGGTTTTGGTGAATTTGTTCGCTCACTGAGCATCTTTCATCCAAATGCATCTGAAGAGAAGAAAATTGAATTTGCATTTAGATTGTTTGACCTTAGACAGAGTGGATACATTGAGCGTCAAGGGTTGAAGGAAATGGTGTTAGCTACTCTCACTGAATCAGATCTTACAGTTACCGATGATGTTGCTGAAGCAATTGTGGACAAGACAATGAAGGAGGTTGATTCAAAAGGAGATGGAAAGATAGATAACGAAGAGTGGAGAGATTACGTGACAAAAAATCCTTCTCTTCTGAAGATCATGACTCTACCCTATCTAAAGGATATAACTATGGCATTTCCCAGCTTTATTTTGCACTCTGAGGTGGAAGACTAG 630 0.3937 MSCFGLKKARPKNKLELSTILASETSFTVNEIEALLCTFKKLSSAIIDDGVIHKAMLSVAYNLRNFIPVTRSEVFDMFDTKRDGVIGFGEFVRSLSIFHPNASEEKKIEFAFRLFDLRQSGYIERQGLKEMVLATLTESDLTVTDDVAEAIVDKTMKEVDSKGDGKIDNEEWRDYVTKNPSLLKIMTLPYLKDITMAFPSFILHSEVED 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00995 209 SMART efh_1 107 135 IPR002048 GO:0005509
Spst3g00995 209 SMART efh_1 70 98 IPR002048 GO:0005509
Spst3g00995 209 SMART efh_1 151 179 IPR002048 GO:0005509
Spst3g00995 209 PRINTS Recoverin family signature 167 187 - -
Spst3g00995 209 PRINTS Recoverin family signature 74 95 - -
Spst3g00995 209 PRINTS Recoverin family signature 121 139 - -
Spst3g00995 209 Pfam EF-hand domain pair 105 172 IPR002048 GO:0005509
Spst3g00995 209 ProSiteProfiles EF-hand calcium-binding domain profile. 103 138 IPR002048 GO:0005509
Spst3g00995 209 Pfam EF hand 74 93 IPR002048 GO:0005509
Spst3g00995 209 CDD EFh 107 177 IPR002048 GO:0005509
Spst3g00995 209 FunFam calcineurin B-like protein 3 18 209 - -
Spst3g00995 209 Gene3D - 19 209 - -
Spst3g00995 209 SUPERFAMILY EF-hand 22 201 IPR011992 -
Spst3g00995 209 ProSiteProfiles EF-hand calcium-binding domain profile. 73 101 IPR002048 GO:0005509
Spst3g00995 209 ProSiteProfiles EF-hand calcium-binding domain profile. 147 182 IPR002048 GO:0005509
Spst3g00995 209 PANTHER CALCINEURIN B 12 209 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00995 Spst-Chr3 13381170 13383382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00995 3 209 EF-hand Containing Proteins AT4G26570 53.302 1.94e-77 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00995 K06268 - vra:106766823 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00995 3 13381170 13383382 Spst3g00995 3 13381170 13383382 ECH