Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00979 ATGCAGTTTGATAAAGCGGAGGAGCTGTGTAAGAAAACTCTGGAGATTCATCGCGTGCATAGTGAACCGGCTTCACTTGAGGAAGCTGCCGATAGGAGGCTTATGGCGCTGATTTGTGAGGCAAAGGGAGATTACGAGTCGGCATTGGAGCATCTTGTGCTTGCTAGCATGGCTATGATTGCAAATGGTCAGGATAATGAGGTTGCATCGATTGATGTTAGCATTGGGAACATTTACATGTCACTTTGTCGTTTTGATGAGGCAATTTTCTCGTATCAGAAGGCACTTACTGTGTTTAAGTCTGCCAAGGGTGAGAACCACCCTTCTGTTGCGTCTGTTTTTGTGCGGCTGGCTGATTTGTACCACAGGACTGGGAAGCTTCGGGAGTCAAAATCATACTGCGAGAATGCACTCAGGATTTACTCAAAGCCGGTGCCCGGAACCACTGCAGAGGAGATTGCAGGTGGCTTGACAGAGGTTTCGGCTGTTTTTGAATCTGTGGATGAGCCTGAGGAGGCGCTGAAGCTGTTAAGCAGGGCAATGAAGTTGTTGGAAGATAAGCCGGGGCAGCAGAGCACTATTGCGGGGATTGAGGCACGGATGGGTGTGATGTATTACATGATTGGGAGGTATGAGGACTCGAGGAACTCCTTTGAGAGTGCTGTTGCGAAACTCAGGGCTAGTGGGGAGAGGAAGAGTGCCTTCTTTGGAGTTGTTCTGAACCAGATGGGGTTGGCTTGTGTTCAACTGTTCAAGATAGATGAGGCTGCTGAATTGTTTGAAGAAGCTAGGGGAATTCTTGAACAGGAGTGTGGCCCGTGTCATCAAGATACACTTGGGGTGTACAGCAATCTTGCAGCTACATATGATGCTATGGGAAGAGTGGGAGATGCGATTGAAATCTTAGAATATGTCCTTAAGTTGAGAGAGGAAAAGCTTGGAATAGCAAATCCAGATTTTGAAGATGAGAAGCGTCGTTTGGCTGAGCTTCTGAAAGAAGCAGGAAAGACACGGGATAGAAAAGCAAAATCTCTGGAAAACCTAATTGATCCCAGTTCAAAGAGGACAAAGAAGGAGGGAACAAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1116 0.4704 MQFDKAEELCKKTLEIHRVHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSAKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIAGGLTEVSAVFESVDEPEEALKLLSRAMKLLEDKPGQQSTIAGIEARMGVMYYMIGRYEDSRNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPSSKRTKKEGTKRWPGLGFRI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00979 371 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 353 - -
Spst3g00979 371 Gene3D Tetratricopeptide repeat domain 237 349 IPR011990 GO:0005515
Spst3g00979 371 MobiDBLite consensus disorder prediction 336 365 - -
Spst3g00979 371 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 231 348 - -
Spst3g00979 371 Pfam Tetratricopeptide repeat 68 142 - -
Spst3g00979 371 Pfam Tetratricopeptide repeat 239 311 - -
Spst3g00979 371 Coils Coil 320 340 - -
Spst3g00979 371 SUPERFAMILY TPR-like 69 309 IPR011990 GO:0005515
Spst3g00979 371 Gene3D Tetratricopeptide repeat domain 52 236 IPR011990 GO:0005515
Spst3g00979 371 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Spst3g00979 371 MobiDBLite consensus disorder prediction 336 371 - -
Spst3g00979 371 SMART tpr_5 69 102 IPR019734 GO:0005515
Spst3g00979 371 SMART tpr_5 279 312 IPR019734 GO:0005515
Spst3g00979 371 SMART tpr_5 154 187 IPR019734 GO:0005515
Spst3g00979 371 SMART tpr_5 29 62 IPR019734 GO:0005515
Spst3g00979 371 SMART tpr_5 237 270 IPR019734 GO:0005515
Spst3g00979 371 SMART tpr_5 111 144 IPR019734 GO:0005515
Spst3g00979 371 SMART tpr_5 195 228 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00979 Spst-Chr3 13271994 13273546 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00979 - - gmx:100807384 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00979 3 13271994 13273546 Spst3g00979 3 13271994 13273546 ECH