Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00977 ATGGCCATCCTCTCCCAATCCACAGCCAGTTTCTCCCCCTCCTTCGTCTCCACCCACTCCGATTTCACTCTCCTCACTCGCTTACCCTGCCGCGTCACCTTCCGCCGCCGCCGCCATGCAGTCTCTTCGCGCCTCAACTCCTCCAAGTTCTCCGGCGCCGGCGGCCCCCTCTCGCCGGATAACGGCGGCGACATCGCCTACGAGCTGCACCACGACTTCTCGCCACAACGCCGCCGCCGCGGCTCGCCGGTGTTCGTCACGCTGCCGGTAAACTCCGTCAGCCGGGAGGGCGGCCGCGTCGCGAGGCCCAAGGCGATGTTGTTCTCGCTCAAGGCGCTCGTCTCGGCCGGCGTCGAAGGCGTGGTAATCGAGATTTGGTGGGGCCTGGTCGAGAAGAACAAACCTAGGTTTTACGATTGGAGAGGGTACGAGGAACTCGTCGCGATGGCATGCAAGTGTGGCCTTAAGGTCCGAGCGGTTCTCGCATTTCATCAGCATGGCGCGGGACCCGATGATCCCGATTGGATACCGCTTCCTCTATGGGTGCTTGATGAGATACAGAGAGATGTAGAGTTAGCTTATTGTGACCGCTTTGGAAGAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTTCCTGTGCTACGGGGGCGTTCTCCTATTCAAGTGTATGCTGATTTTATGAGGGATTTTAGGAACAATTTCAGGTCTTTGCTTGGTGTTATCATTACAGGCGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTTACAAGACCCAAATTTGGCATGGTCTCATGAACTTGGAGAGTTTCAGTGCCATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATCGGAATGCGTGAATGGGGAAATGGTGGTCCATTTGGTACTGGTAGTTTGATGCAAAATCCTGACCATACTGATTTTTTCAAAAGTGATGGTGGCTCTTGGGACACACCATATGGTAAATTTTTCCTTGAATGGTACTCAGATATGTTGCTGCTGCATGGGGAAAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACCGAGGTCCATATATCAGCAAAAGTGGCTGCCATTCACTGGCACTATGTCACACAATCTCATCCATCAGAGTTAACAGCTGGCTATTATAATACTTTTAACAGGAATGGATACTTACCCATTACTCGCATGTTTAGTAAATATGGATTCTCGATTTGTTGCTCTTGTTTTGAAATGCAAGATGAAGTAATGCAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTACTGGCTGCTAGGCTCTATGACCTATCACTTGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTCACCCAGGTGCTAAAGATGTCAAAATTTTACTCGGAGGGGATCGAGAAGCGACCTTTTTCATTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCAGTTTACTCGTTTTGTAAGACAAATGTCTCATGGAAATATTTTTCGAGCCAGATTAAATTCTGTTGGTGACATTCGGTTTAGGACTGCCCGAGTGATAGCAGAGGCAGGACTGTTGTACCACCTATATCAGCACCCTTGA 1653 0.4809 MAILSQSTASFSPSFVSTHSDFTLLTRLPCRVTFRRRRHAVSSRLNSSKFSGAGGPLSPDNGGDIAYELHHDFSPQRRRRGSPVFVTLPVNSVSREGGRVARPKAMLFSLKALVSAGVEGVVIEIWWGLVEKNKPRFYDWRGYEELVAMACKCGLKVRAVLAFHQHGAGPDDPDWIPLPLWVLDEIQRDVELAYCDRFGRRNIEYISLGCDILPVLRGRSPIQVYADFMRDFRNNFRSLLGVIITGVQIGMGPGGELRYPSFSLQDPNLAWSHELGEFQCHDKYMLASLNASARNIGMREWGNGGPFGTGSLMQNPDHTDFFKSDGGSWDTPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKVAAIHWHYVTQSHPSELTAGYYNTFNRNGYLPITRMFSKYGFSICCSCFEMQDEVMQKINPDGSPEGFLRQLLLAARLYDLSLEGQNFSTNLDDGAFTQVLKMSKFYSEGIEKRPFSFNFVRMDKRLFESRNWDQFTRFVRQMSHGNIFRARLNSVGDIRFRTARVIAEAGLLYHLYQHP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00977 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 365 381 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 400 423 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 382 393 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 160 181 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 138 156 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 117 131 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 329 348 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 252 274 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 Pfam Glycosyl hydrolase family 14 87 509 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 55 515 IPR001554 GO:0000272|GO:0016161
Spst3g00977 550 Gene3D Glycosidases 74 536 - -
Spst3g00977 550 SUPERFAMILY (Trans)glycosidases 81 537 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00977 Spst-Chr3 13242888 13245407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00977 2 543 Glycoside Hydrolase AT4G17090 42.883 9.58e-150 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00977 K01177 - gmx:100805981 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00977 3 13242888 13245407 Spst3g00977 3 13242888 13245407 ECH