Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00820 ATGAACATTTGTTATTGCTGGGTATCGTCAATGAAATTCCCCTTTCACGGCTTGCGCTTCTCAAGGCCCTTTATCTCTCTATCTTCTTCATCTCGCAATCGCATGATGACTATTCAAAATTGTTCCTCTAATTCTTCTTCTTCAGCTTCCATATCAACGGAGTCCAAAGAGAAGAAGAGGGAAAATATACCTTGGTTAATTGTTGGCCTCGGGAATCCAGGCAAAAAGTACGCTGCCACTCGCCACAATGTCGGCTTTGAGATGGTTGATGCCATAGCTGAAGCTGAAGGGATATCTATGAACACTGTTTCCTTCAAAGCGTTGTTTGGAAAAGGTTTAATAGGTGATGTACCCGTCATACTTGCAAAACCACAGACTTTTATGAATTTAAGTGGCGAATCTGTTGGGTCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTGATCTTTGATGACTTGGATTTGCCTTTTGCTAAATTGCGGCTTCTACCAAAGGGTGGACATGGAGGCCACAATGGAATGAAGAGTGTTATTAATCACTTCAAAGGGAATAGTGGTTTTCCTCGTTTAAGAATTGGCATTGGACGACCTCCTGGTAAAATGGATCCTGTAGCATTTGTTCTTCGCACGTTCACTAAACAGGAAAGGGAAGAGTTGAATTTTACATTACAAGATGGATTAGAAGCTGTGCGGATTCTTTTGCTTGAGGGTTTTGATAAAAGTGCAACATTTGTTAATAGTGCCAAAAAGATAGAGCAAACAGACGAAGTATCAGCTATAGTCATAGACCTGGGTTCACACACATGCAAAGCTGGTTACGCTGGCGAAGATGCTCCCAAGGCCGTTTTCCCCTCTGTTGTTGGTGCAATTGATCAAATGGACATTGATGGACCTGTTGACTCTGACGAGAACAATGGATCTGCTGCGGATTTACAAAACAATAACAAAAATCATGAATCTGACAAGAGCAAGGGAAAGTGCAAACTTTATGTAGGATCTCAGTCACTGGGATACCGCAGAGACTTTATGGAGGTGGTTTCACCGTTGAAGAATGGAGTTGTTGTTGACTGGAATATTGTTGACAACATATGGGATCATGCTTTGAGGGAATGCCTCCTAGTTGATCCTAAAGAGCGTCCAATGCTACTTGCCGAGCCATGTTCCAACACTCAAGAACAGAGAGAAAGTGGTGGTGGATCAACTACAGTTGTTCCAGTGCTGGATGGTTATGTTCTTCAAAAGGCACTAATGCCAGTTCTACGTTGTGATAACTTCTCCTATTGGAGGAGAATTTCTAACAGATTGCTTGATGAAAAGTTTGGAAGGCAAAGACCTCGATATTCATTCAAGAAAAAGGAAATACGACCTGGAAATCTTCAGACTGTAGACCTTGATTTCCCACATACAACAGAAAGCTACAAACTCTACTCCCAGAGGGTTATTGTTAGTGACATCAAGGAATGTGTTTGCCGAACACCAGATTCTCCATATGATGGTTTGTATCAGCGTTGTAGTTTCAGATAA 1533 0.4162 MNICYCWVSSMKFPFHGLRFSRPFISLSSSSRNRMMTIQNCSSNSSSSASISTESKEKKRENIPWLIVGLGNPGKKYAATRHNVGFEMVDAIAEAEGISMNTVSFKALFGKGLIGDVPVILAKPQTFMNLSGESVGSIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVINHFKGNSGFPRLRIGIGRPPGKMDPVAFVLRTFTKQEREELNFTLQDGLEAVRILLLEGFDKSATFVNSAKKIEQTDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDGPVDSDENNGSAADLQNNNKNHESDKSKGKCKLYVGSQSLGYRRDFMEVVSPLKNGVVVDWNIVDNIWDHALRECLLVDPKERPMLLAEPCSNTQEQRESGGGSTTVVPVLDGYVLQKALMPVLRCDNFSYWRRISNRLLDEKFGRQRPRYSFKKKEIRPGNLQTVDLDFPHTTESYKLYSQRVIVSDIKECVCRTPDSPYDGLYQRCSFR 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00820 510 SMART actin_3 260 508 IPR004000 -
Spst3g00820 510 MobiDBLite consensus disorder prediction 297 327 - -
Spst3g00820 510 Pfam Peptidyl-tRNA hydrolase 66 244 IPR001328 GO:0004045
Spst3g00820 510 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 170 180 IPR018171 GO:0004045
Spst3g00820 510 Gene3D - 257 400 - -
Spst3g00820 510 Gene3D - 49 252 IPR036416 GO:0004045
Spst3g00820 510 NCBIfam aminoacyl-tRNA hydrolase 65 234 IPR001328 GO:0004045
Spst3g00820 510 Hamap Peptidyl-tRNA hydrolase [pth]. 64 242 IPR001328 GO:0004045
Spst3g00820 510 SUPERFAMILY Peptidyl-tRNA hydrolase-like 64 249 IPR036416 GO:0004045
Spst3g00820 510 PANTHER PEPTIDYL-TRNA HYDROLASE 51 249 IPR001328 GO:0004045
Spst3g00820 510 SUPERFAMILY Actin-like ATPase domain 257 398 IPR043129 -
Spst3g00820 510 CDD CRS2 64 253 - -
Spst3g00820 510 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 77 90 IPR018171 GO:0004045
Spst3g00820 510 FunFam Peptidyl-tRNA hydrolase 62 252 - -
Spst3g00820 510 Pfam Actin 258 398 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00820 Spst-Chr3 11667184 11678400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00820 258 493 Miscellaneous Gene Families AT2G42100 26.374 4.79e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00820 K01056 - gmx:100526866 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00820 3 11667184 11678400 Spst3g00820 3 11667184 11678400 ECH