Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00819 ATGGGGTTTGGTACAAAAATAGAAGTGGAGGAAAAGGAAGGAGATTCAGTAGATGAGGAATTAGATGTAGTGACATGTGGAGATGCAGTAGAAGATATTGAAGACAAAGCTATTGGTCGGGCAACATCACGAAATGACTTGTTGACCATTAGAGATGCTCTTGAAGTTTCTTCTGATATGTATAAGAAAGATACTAATAATGTGCCAGACTATTGCCAGCGTCACCTTATCTCATTACCTATTTGGGAGGAATTACGATTTTGGGAAGGATATTTTGACTATTTAATGGAGCAATCTTCAAACAATTGTGTGACTGTCAGGACTTTTTCTGCTGCCAAAATTGCAGCTGTTTGCATTTATAATTTTGTTGAGGAGGTTCGACAGAACAAGGTTGTTCAAGTGGTAACCAACAATGGGAGTAATTACCTATTGGAAATCATGGAGGCATGTGCAATATTGGAGACCCAATCTTTCAAGGTTTCTGGTGATGAGGAGTTGCTCGTCCTGGTGCAGCCATTGGTCATGTCGGCCAACTATGCATCTTTGGTGACAGCTCAGCTTGTTGTGTTGACATCACACATGGCTGGGCTGGGACTTCCTGATAACGATGCTTGGTACATGATTGAAACAATTGCAGAGAGAAACAGCATTGGATCCAAGCAATTTATAAAAATCAGGGGGTTCTTATCTCATATCCAGCAATTACGTAATGGATACTGGGGAATCTCTTCAATGAAGGCACAGTCTGTGTTAGCACATGCATTGCCATCCCCACATTCTAAAGACACCAAAGATGAGAACCAGCAACCCACTGAGGCAACTGGTGTTGGTAGAAGCTGGGTACAGAGTATGTTCACTCGAAATCCAACAACTAGATCCAGCTCATTTAGTCATGTTCGTAGATGGACATCTGACGGAGGCAACTCAGTTCTACCTACAAATGAGAATGGGACTCCTCGTACACAAGATATGTTGAGTGGTGGCCAGAAAAAGCTTCAAACCAATGTACGCATACTTAGGGGTCATAACGGTGCCGTTACTGCTCTCCATTGTGTTACAAAACGAGAAGTGTGGGATTTGGTAGGTGACCGTGAAGATGCTGGTTTCTTTATTAGTGGAAGCACAGATTGCTCAGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTCTAAAAGGGCATACTAGAACTATCCGGGCAATAAGTTCAGATAGGGGGAAGGTGGTATCAGGATCTGATGACTGGTCTGTTTTAGTGTGGGATAAGCAAACAACTCAACTTCTAGAAGAGCTTAAAGGCCATGATGGACCGGTCAGCTGTGTGCGCACGCTCTCAGGTGAACGGGTGTTAACTGCATCCCATGATGGCACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTCTATGCATGGAATATGATGACAATGTGGGAGTGTTGGCTGCTGGTGGAAGAGATGTGGTTGCTAACATATGGGACATCCGTGCCAGTAGGCAGATGCATAAACTTTCAGGACACACGCAATGGATACGGTCCGTAAGAATGGTTGGTGACACTGTGATCACTGGTAGTGATGATTGGACAGCAAGAATATGGTCTGTTTCCCGAGGAACATGTGATGCCGTCTTAGCTTGCCATGCAGGGCCAATATTATGTGTTGAATATTCTTCTTTAGACAGAGGAATCATTACAGGGTCCACTGATGGCCTGCTACGTTTTTGGGAAAATGATGATGGAGGTGGTATACGGTGTGCAAAAAATGTAACAATTCACAATGCTGCCATATTATCTGTCAATGCTGGGGAGCACTGGTTAGGCATTGGAGCAGCTGATAATTCTTTGTCACTCTTTCATCGGCCTCAAGAAAGACTTGGTGGTTTTTCTGGCCCTGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCACAAAAAACGGTTGCTATGGTAAGATGTATTGCTTCAGACTTGGAAAGGAAAAGAATATGCAGCGGTGGTCGCAATGGACTTCTAAGGCTATGGGATGCAACCATTAATATTTGA 2088 0.4392 MGFGTKIEVEEKEGDSVDEELDVVTCGDAVEDIEDKAIGRATSRNDLLTIRDALEVSSDMYKKDTNNVPDYCQRHLISLPIWEELRFWEGYFDYLMEQSSNNCVTVRTFSAAKIAAVCIYNFVEEVRQNKVVQVVTNNGSNYLLEIMEACAILETQSFKVSGDEELLVLVQPLVMSANYASLVTAQLVVLTSHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGISSMKAQSVLAHALPSPHSKDTKDENQQPTEATGVGRSWVQSMFTRNPTTRSSSFSHVRRWTSDGGNSVLPTNENGTPRTQDMLSGGQKKLQTNVRILRGHNGAVTALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSELRATLKGHTRTIRAISSDRGKVVSGSDDWSVLVWDKQTTQLLEELKGHDGPVSCVRTLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGVLAAGGRDVVANIWDIRASRQMHKLSGHTQWIRSVRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGGIRCAKNVTIHNAAILSVNAGEHWLGIGAADNSLSLFHRPQERLGGFSGPGSKMAGWQLYRTPQKTVAMVRCIASDLERKRICSGGRNGLLRLWDATINI 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 590 - -
Spst3g00819 695 FunFam DENN domain and WD repeat-containing protein SCD1 293 516 - -
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 518 557 IPR001680 GO:0005515
Spst3g00819 695 PRINTS G protein beta WD-40 repeat signature 535 549 IPR020472 -
Spst3g00819 695 PRINTS G protein beta WD-40 repeat signature 370 384 IPR020472 -
Spst3g00819 695 PRINTS G protein beta WD-40 repeat signature 453 467 IPR020472 -
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 435 469 - -
Spst3g00819 695 FunFam DENN domain and WD repeat-containing protein SCD1 517 695 - -
Spst3g00819 695 ProSitePatterns Trp-Asp (WD) repeats signature. 495 509 IPR019775 -
Spst3g00819 695 PANTHER DENN DOMAIN-CONTAINING PROTEIN 4 36 100 - -
Spst3g00819 695 CDD WD40 335 632 - -
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 435 475 IPR001680 GO:0005515
Spst3g00819 695 ProSitePatterns Trp-Asp (WD) repeats signature. 453 467 IPR019775 -
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 480 517 IPR001680 GO:0005515
Spst3g00819 695 Gene3D - 293 514 IPR015943 GO:0005515
Spst3g00819 695 Gene3D - 515 694 IPR015943 GO:0005515
Spst3g00819 695 MobiDBLite consensus disorder prediction 269 328 - -
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 518 552 - -
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 365 383 IPR001680 GO:0005515
Spst3g00819 695 SMART WD40_4 596 633 IPR001680 GO:0005515
Spst3g00819 695 SMART WD40_4 469 508 IPR001680 GO:0005515
Spst3g00819 695 SMART WD40_4 388 425 IPR001680 GO:0005515
Spst3g00819 695 SMART WD40_4 428 466 IPR001680 GO:0005515
Spst3g00819 695 SMART WD40_4 332 383 IPR001680 GO:0005515
Spst3g00819 695 SMART WD40_4 551 590 IPR001680 GO:0005515
Spst3g00819 695 SMART WD40_4 511 548 IPR001680 GO:0005515
Spst3g00819 695 SMART WD40_4 651 690 IPR001680 GO:0005515
Spst3g00819 695 SUPERFAMILY WD40 repeat-like 316 691 IPR036322 GO:0005515
Spst3g00819 695 Pfam WD domain, G-beta repeat 334 383 IPR001680 GO:0005515
Spst3g00819 695 Pfam WD domain, G-beta repeat 514 548 IPR001680 GO:0005515
Spst3g00819 695 Pfam WD domain, G-beta repeat 553 589 IPR001680 GO:0005515
Spst3g00819 695 Pfam WD domain, G-beta repeat 430 466 IPR001680 GO:0005515
Spst3g00819 695 Pfam WD domain, G-beta repeat 393 425 IPR001680 GO:0005515
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 590 IPR001680 GO:0005515
Spst3g00819 695 MobiDBLite consensus disorder prediction 255 328 - -
Spst3g00819 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 434 IPR001680 GO:0005515
Spst3g00819 695 ProSitePatterns Trp-Asp (WD) repeats signature. 677 691 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00819 Spst-Chr3 11638034 11653048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00819 325 642 Acyl Lipid Metabolism Gene Families AT3G18860 25.938 6.69e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00819 - - pvu:PHAVU_002G3153001 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00819 3 11638034 11653048 Spst3g00819 3 11638034 11653048 ECH