Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00790 ATGTGTTCTTCGAAGACAATCAACATCGCTGCGAGTACGCAGAAACTCGATGTGGATAATCGTATTGCTCTCCGATTCTACTACAGGATCGCTGATAATATCCTCAAACAGGTATTTCTCCTCTACACTGCGTATGATATGAACACCAACGAATTCGGTAGGATTTCATTTGCTTTTGCTGATATCTTTCGCGCAGAGAAAAATATTGTCGATCTATATATCATGCTCCTAAGATTTTCTAGTTTGGTCTCTGAGACAATACCAAATCACCGAGATTATAGGTCCTCTCCCCGAAGCAAAAAAGAAATTCTGAGAAAGAAATTGTTAAATGCTGTGAATGAGCTGGAGACATTGAAACCAAAGGTGCAACAGAAGATCGATGAGTTCAATAGCAGGCGAGCATACCACCGCCACAATGGGCGGGAAAAATGTCATTCGAATAGTTTGTTGGTTTCTCCTGTGAAAAAGCAAACTTTGGCTAGATATGATCAAACAAAGGCAGTCATACCAACCACTGGAGAGTTTGTTTACCAAGGATCAAGGGGCCAGCAGTTTTCTAGTGTAAGGCCTGTGGAAGAGAATATGAGGAGACTATCTCTAGGTCTCCTACGGCCAAAGGAGGAAACTCTCTCCAAACATTCAATTCTAGGTCCCAATGGGCTGAAAGGTCAACGGCAACAACATGCGAGTGATAAAGGGGTCTTGTATCCAACCATCACAGATCTGTCTCCAGTTGAAATTCCAAGGTTATGGCCTATTTTTCTGCAGTTTTTTATGTTGTTGGCCTTTCTAAATGATGTTCAGTTGGTTAAGCTGTGGGACATCCACCCTTTTTCCCATTCGCTTATTCACTCCCCCTTCCTCTACCTTCACAAACCCTTGGAAGATGGATCTCTGAATGAGAAAGATAATAGCATTTCAGAACAATATAGATCAGATTTAGAGTCAATTCTTACCCAGAGTGACAACTGCCAGGACAAGCATGCTGATGAAGCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAATCCCTACTCAAATAGAGATTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTACAAGATTTGATTCCAGCAGCGTCACCTCATGTTATTGAAGAAGGATGTAAAACAGAAATTCCAACATCGGATGGTATTGTTCATGGCGAGTCTCCTCTTCAACTACACATTTCAACTTCTATAATGAAGAGTTTTATGGAGCTTGCCAAGTCAAACACTGACAAAAATTTGGAGACTTGTGGTATTCTTGCAGGTTTGCTTAAAAACAGAAAATTTTATATTACCGCTCTAATAATCCCAAAGCAGGAGGCAACATCCAGTTCTTGTCAAGCTACAAATGAAGAGGAGATATTTGAAGTACAGGATAAGCAATCTCTTTTCCCCCTTGGCTGGATCCACACACATCCTACACAGTCTTGTTTCATGTCATCTATTGATGTACACACCCATTACTCATATCAGATTATGTTGCCAGAAGCTGTTGCAATAGTTATGGCACCAACAGACAGTTCCAGAACCCATGGAATTTTTAGGTTGACAACCCCCGGTGGAATGTCGGTTATAAGACAATGCCCGCAACGTGGCTTTCATTCACATAATCAGCCTCCAGATGGTGGTCCCATTTATGATACATGCACAGATGTTTACATGAACCCAGATTTAAAATTTGATGTCATTGATCTTCGATAA 1716 0.412 MCSSKTINIAASTQKLDVDNRIALRFYYRIADNILKQVFLLYTAYDMNTNEFGRISFAFADIFRAEKNIVDLYIMLLRFSSLVSETIPNHRDYRSSPRSKKEILRKKLLNAVNELETLKPKVQQKIDEFNSRRAYHRHNGREKCHSNSLLVSPVKKQTLARYDQTKAVIPTTGEFVYQGSRGQQFSSVRPVEENMRRLSLGLLRPKEETLSKHSILGPNGLKGQRQQHASDKGVLYPTITDLSPVEIPRLWPIFLQFFMLLAFLNDVQLVKLWDIHPFSHSLIHSPFLYLHKPLEDGSLNEKDNSISEQYRSDLESILTQSDNCQDKHADEAPSLISFEATEIPTQIEIIRQPSPPPVLAEVQDLIPAASPHVIEEGCKTEIPTSDGIVHGESPLQLHISTSIMKSFMELAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQEATSSSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAVAIVMAPTDSSRTHGIFRLTTPGGMSVIRQCPQRGFHSHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00790 571 FunFam AMSH-like ubiquitin thioesterase 3 382 571 - -
Spst3g00790 571 Gene3D - 2 148 - -
Spst3g00790 571 SUPERFAMILY JAB1/MPN domain 396 527 - -
Spst3g00790 571 SMART pad1_6 396 524 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst3g00790 571 Pfam USP8 dimerisation domain 59 125 IPR015063 -
Spst3g00790 571 Gene3D Cytidine Deaminase, domain 2 382 571 - -
Spst3g00790 571 ProSiteProfiles MPN domain profile. 397 527 IPR037518 -
Spst3g00790 571 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 394 500 IPR000555 GO:0005515|GO:0008233|GO:0008237
Spst3g00790 571 Coils Coil 112 132 - -
Spst3g00790 571 CDD MPN_AMSH_like 396 571 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Spst3g00790 571 PANTHER AMSH-LIKE PROTEASE 3 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00790 Spst-Chr3 11436444 11449060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00790 K11866 - gmx:100800636 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00790 3 11436444 11449060 Spst3g00790 3 11436444 11449060 ECH