Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00708 ATGGGGAGCCCCGGATTCAGCAATCTCAATAATGCGCAGCAGCAACGGTTAGGCATAACAGAACCCATCTCATTGGGTGGACCAACTGATTATGATGTGTTAAAGACACGTGAACTTGAGAAGTACTTGGAAGATGCTGGCTTGTATGAGAATCAGAAGGAATCGGTTAGTAGGGAGGAAGTGCTTGGTAGGCTAGACCAGATTGTGAAGATTTGGGTCAAAAACATTAGCCGTGCTAAGGGACTAAATGAACAACTGGTGCAAGAAGCAAATGCCAAGATTTTCACTTTTGGCTCATATCGACTTGGGGATTGTGTTGTCATATGGCAAGCTGCCACTGTACATGGACCTGGAGCAGATATAGACACTCTTTGTGTGGGGCCGAGACATGCATCCAGAGATGAAGATTTCTTTGGTGAGCTGCATAAGATGCTATCTGAGATGCCAGAAGTGACAGAGTTGCACCCTGTGCCCGATGCTCATGTACCAGTGATGCGGCTCAAGTTCAATGGTGTTTCGATTGATCTTCTCTATGCAAAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATATATCACAGGAGTCAATATTACAAAATGCAGATGAGCAAACTGTTCGTAGTCTTAATGGTTGTAGAGTGACTGATCAAGTCCTGCGTCTGGTTCCAAATATTCAGAATTTTCGTACAGCATTGAGGTGCATGAAGTTTTGGGCAAAGCGTCGGGGTGTTTACTCGAATGTTACAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGCTGCTCGAATATGCCAGCTATTTCCTAATGCACTCCCTAATATGTTAGTGTCTCGATTCTTCAGGGTATATTCTCAATGGCATTGGCCGAATCCAGTAATGCTTTGTGCTATTGACAAGGGATCACTTGGACTTCAAGTGTGGGATCCTAGAAGATATCCCAAGGATAGATTCCATCTAATGCCAATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCCTCAAGTACATTGCGTATTATGATGGAGGAATTTCAGAGGGGAAATGAAATATGTGAGGTTATGGAGGCTAACAAGGCTGATTGGGGCACTCTTTTTGAGCCTTACCCCTTTTTTGAAGCTTATAAGAATTATTTGCAGATAGACATATCAGCAGAGAATGCTGACGATCTTAGAAAATGGAAAGGCTGGGTTGAGTCTCGTCTGCGCCAGTTGACATTGAAAATTGAGAGGCACACTTATGGTAGGCTTCAGTGTCATCCACATCCTGGTGACTTTCCAGACAAATCCAGACCTTTCCACTGTTCCTACTTCATGGGACTGCAACGTAACCTAGGGGTTCCTGTCAGTGGTGGTGAGCAGTTTGATATAAGACTAACTGTTGAAGAATTTAAGCATTCTGTCAACGTGTACACTCTGTGGAAACCTCGAATGGATATCCATGTCTCCCATGTGATACGTCGTAATATACCCACCTTCGTATTTCCTGGAGGTGTTCGACCTTCTCACCCATCTAAAGTAACTTGGGAGAGTAAGCGAAGTTCAGAATTAAGTGTTTCTGGCCATGGTCAAGCAGAACAGTCTCAAGAAGGCAAAGTGGTTGTATTAGGAGCAAACGATGATAGGAAGAGAAAACTAGCAGAAGATAGTGTGGATAGCCTGAGAAATTCCAAGTCCCATGCATCTTTGCCTCCCTGCAGCAGGGAAGTTCTTGAAGATGGAAATCTTATTAGCGTTGCTAGTTCTGTGAAATGTAATGACTCAGAAATCAATAGTACGAGTGAACAACAGAGTGAGAAACTTGATTTGAAATCTTCATGGGAGTGTCCTGAGGACAGGGAAACCAATGCATCAGTGAGAAGTAACTTACAAGTTTATGCAACACTTACTGCCAAGGATACATCTAGTTCTGAAGAAGCTGAAAAGCTAGCCATTGAGAAGATTATCTGTGGTCCATATGATTCACACCAAGTCTTTTCAGAGGAACCTGAAGAACTTGAAGATGATCTTGAGTACAGAAATCAAGTCAAAGATTTCGGTGGCAACATGATAAACAGCAACTTGGACTTTTCAAACCCAGAGGCTGCAGAACCAATTATTCCTAAGAGGGAAACTGCTTCTGCAACTTGTTTATACTCAAATGGGGGATCAGAAGAGCTCGAGCCGGTGGAGCTGACAGCACCACCATTATTAAGTGGGAATCCTGCACCTGTGGCACAGCGGAAACCCCTTATCAGGTTGAAGTTCACCTCCTTAGGAAAAGCTGCTGACTGA 2286 0.4339 MGSPGFSNLNNAQQQRLGITEPISLGGPTDYDVLKTRELEKYLEDAGLYENQKESVSREEVLGRLDQIVKIWVKNISRAKGLNEQLVQEANAKIFTFGSYRLGDCVVIWQAATVHGPGADIDTLCVGPRHASRDEDFFGELHKMLSEMPEVTELHPVPDAHVPVMRLKFNGVSIDLLYAKLSLWVIPEDLDISQESILQNADEQTVRSLNGCRVTDQVLRLVPNIQNFRTALRCMKFWAKRRGVYSNVTGFLGGINWALLAARICQLFPNALPNMLVSRFFRVYSQWHWPNPVMLCAIDKGSLGLQVWDPRRYPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMMEEFQRGNEICEVMEANKADWGTLFEPYPFFEAYKNYLQIDISAENADDLRKWKGWVESRLRQLTLKIERHTYGRLQCHPHPGDFPDKSRPFHCSYFMGLQRNLGVPVSGGEQFDIRLTVEEFKHSVNVYTLWKPRMDIHVSHVIRRNIPTFVFPGGVRPSHPSKVTWESKRSSELSVSGHGQAEQSQEGKVVVLGANDDRKRKLAEDSVDSLRNSKSHASLPPCSREVLEDGNLISVASSVKCNDSEINSTSEQQSEKLDLKSSWECPEDRETNASVRSNLQVYATLTAKDTSSSEEAEKLAIEKIICGPYDSHQVFSEEPEELEDDLEYRNQVKDFGGNMINSNLDFSNPEAAEPIIPKRETASATCLYSNGGSEELEPVELTAPPLLSGNPAPVAQRKPLIRLKFTSLGKAAD 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00708 761 FunFam Poly(A) polymerase alpha, putative 50 216 - -
Spst3g00708 761 Gene3D Poly(A) polymerase predicted RNA binding domain 374 489 - -
Spst3g00708 761 MobiDBLite consensus disorder prediction 540 559 - -
Spst3g00708 761 SUPERFAMILY PAP/OAS1 substrate-binding domain 223 372 - -
Spst3g00708 761 PANTHER POLY A POLYMERASE 9 538 - -
Spst3g00708 761 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 373 499 IPR011068 GO:0003723|GO:0016779|GO:0031123
Spst3g00708 761 FunFam Nuclear poly(A) polymerase 4 374 489 - -
Spst3g00708 761 Pfam Poly(A) polymerase central domain 18 372 IPR007012 GO:0043631|GO:1990817
Spst3g00708 761 FunFam Putative poly(A) polymerase gamma 189 370 - -
Spst3g00708 761 Pfam Nucleotidyltransferase domain 83 174 IPR002934 GO:0016779
Spst3g00708 761 Pfam Poly(A) polymerase predicted RNA binding domain 375 431 IPR007010 GO:0003723|GO:0043631
Spst3g00708 761 CDD NT_PAP_TUTase 58 222 - -
Spst3g00708 761 MobiDBLite consensus disorder prediction 516 531 - -
Spst3g00708 761 Coils Coil 39 59 - -
Spst3g00708 761 Gene3D Beta Polymerase, domain 2 50 216 IPR043519 -
Spst3g00708 761 Gene3D - 18 370 - -
Spst3g00708 761 MobiDBLite consensus disorder prediction 516 571 - -
Spst3g00708 761 SUPERFAMILY Nucleotidyltransferase 18 221 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00708 Spst-Chr3 10462210 10466166 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00708 K14376 - gmx:100816915 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00708 3 10462210 10466166 Spst3g00708 3 10462210 10466166 ECH