Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00703 ATGCCTATGGCATATTCCGGCGTATTTAAGGGCTTCATCAGATTCAAAGCTATGTCGCGGCTTCGTTGCACTCCTCTTACACCTTCTTTTTCTTCCATTTCTACCACTCATTTCCACCGCACCGCCATTCGCCTCCGCTCCTCCTCCACCGCGCTTCAAGTCGTCAACGTCAAGCGCCAGGGGCCCGTTACGTTGCCGTTTTGGCACCAGCGCAGCTCCAATTATGGTCGTTTTGCATACCAGGACGTGTCCAGTGATGATTCCGATGTTGAATTCGCGTCTTCTCCCTCTCACAGCCAACAAGGTGATTCAACACTCGAGAACATTGACGAGTGGAGATGGAAGCTGACCATGCTTATGCGGTCCAAAGACGAACAGGAAGTGGTGTCCAGAGAGAAGAAGGACCGTCGCGATTTCGAGCAACTTTCCAATTTAGCTAACAGGATGGGTTTGTATAGCCGGCAATATGCAAGAATTGTTGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAGACGCCCGCAAAGAGAGGTAGTCTTACCATTTGGTGTTCATAAAGAAGTAGATGCCCATCTCCTTGCCCATCTTTCACAAAAGGCTACAAACAAGTGGGGTTCTTTGAATGATTCCTTGCACAAATCAAGTGATACTATAAGCATTCCAGCCAATGGAGGAATGTATGAACAGCCAGAGCCCATGACCCACAACAGTGTTGTCAAGGAGAAAATCCTTCAACGAAGAAGTTTGCAACTGCGTCATCAGCAACAGGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCCGCTTTCAAAGAGAAGGATGCATTTTTGAAAGTTATTTCAGAGAATCAGGTCGTTGTTGTATCAGGTGAAACTGGTTGTGGTAAGACGACACAACTTCCTCAATACATATTAGAATCTGAGACTGAGGCTTTACGTGGAGCTGTATGTAACATAATTTGTACTCAGCCCAGAAGAATATCTGCCATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGAGAGAAGTTGGGAGAATCTGTTGGATACAAAGTTCGCCTGGAGGGTTTGAAAGGAAGAGATACCCGTCTTCTTTTTTGCACCACAGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAAAGGTGTTACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTCGTCGTCCTGATTTGAGATTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCATATTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCACATTTTCTTGAGGATATTCTGGAAAGGACTGGATATCGGTTGACACCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAGCTCAAACTTTCAGAAAAAGAAAGAGCCAGATAGCTTCTGCTGTTGAGGATGCTTTAGAAGTTGCAGACTTTAAGGGATATAGCCTGCGCACCCAAGATTCATTGTCCTGCTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAACATGTGCTTTGTCACATTGTTAAGAATGAAAGGCCAGGAGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATCAACTTCAAGCTCATCCTTTGTTGGGTGATCAGAGCCGAGTATTGCTTCTTGCATGCCATGGCTCCATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGAAGGAGGGGTAAGGAAAATTGTTCTGGCAACTAACATGGCCGAGACTAGTATTACCATTAATGATGTTGTCTTTGTGGTTGACTCTGGAAAAGCAAAAGAAACATCATATGATGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCAACCCGGCAGAGAAGAGGAAGGGCCGGTCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTTCCGATTATCAATTGCCAGAGCTTTTGAGAACACCATTACAGTCCTTGTGTCTACAAATCAAAACTCTACAACTTGGAAGCATAACTGAGTTTTTATCTAGAGCTCTGCAGGCCCCAGAACCTCTATCGGTTGAAAATGCTATTGAATATTTGAAGATTATTGGGGCCTTAGATGAGAATGAAAATTTAACAGTTTTAGGACAAAAATTGGCAATGCTTCCTGTAGAACCCAAACTTGGCAAGATGCTCATTTTAGGAACCATCTTCAAATGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTGATGCCATCTGACAAGAAGGATCTTGCAGAGTCTGCCAAATCCCAATTTGCTGCTCGTGACTATAGTGATCATCTTGCACTTGTCCGGGCTTATGAGGGTTGGAAAGATGCCGAAACACAGCAAGCTGGTTATGAGTACTGTTGGCGAAATTTTCTTTCTTCTCAGACACTTAGGGCCATTGACTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGGTCAATAACAAGCCTGAAACCTACAATGCATGGAGTCATGAAGTGCATCTTCTTAGAGCAGTCATATGTGCGGGTTTATTTCCCGCAATATCTTCCGTTGTGAACAAAGATAAGTCAATAGCACTGAAAACAATGGAGGATGGTCAGGTTCTTTTGTATTCTAGCTCTGTAAATGGCTGTGTACCCCGAATTCCATACCCGTGGTTAGTGTTTAATGAAAAGGTGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGATTCTGTGCTTCTGCTATTTGGTGGGAATGTATCCAGAGGTGGACTAGATGGTCACCTTAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGAATTAGCCAAGACTTACTTAAGCTTAAAGATGGAACTAGAAGAACTGATACAGAAAAAGCTTCTGGATACCACGCGGGAAACACAATCGCATAGTGAGCTTCTTTCAGCTGTTAGATTGTTGGTTTCTGAGGACCATTGTGAGGGTAGATTTGTCTTTGGTCGCCAGGTCCTACCACAAGTAAAGAAGGAACCAAACTCCAAAAGTGGAGTCGAGGGTGAAAATTCTAAAAATCAACTTCAAACATTTCTCAACAGGGCTGGACATGAATCACCAACTTACAAAACAAAGCAGCTGAAGAACTTACAATTCCGTTCTACTGTCATATTTAATGGGTTGAATTTTGCTGGTCAGCCATGCAGCAGCAAAAAGTTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTTCTATGGTTAAAAGGGGATAGCCATTCATCCGATGATATTAACCATGCTTCAGTGCTTTTGAAGAAGAGCAACAAGAAAAGTAGGAAGAAATCGTTGAGTAGCGCTAAATGGAGTTGA 3528 0.4246 MPMAYSGVFKGFIRFKAMSRLRCTPLTPSFSSISTTHFHRTAIRLRSSSTALQVVNVKRQGPVTLPFWHQRSSNYGRFAYQDVSSDDSDVEFASSPSHSQQGDSTLENIDEWRWKLTMLMRSKDEQEVVSREKKDRRDFEQLSNLANRMGLYSRQYARIVVFSKAPLPNYRPDLDDRRPQREVVLPFGVHKEVDAHLLAHLSQKATNKWGSLNDSLHKSSDTISIPANGGMYEQPEPMTHNSVVKEKILQRRSLQLRHQQQDWQESPEGQKMLEFRRSLPAFKEKDAFLKVISENQVVVVSGETGCGKTTQLPQYILESETEALRGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGLKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPDLRLILMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILERTGYRLTPYNQIDDYGQEKTWKMQKQAQTFRKRKSQIASAVEDALEVADFKGYSLRTQDSLSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSRVLLLACHGSMASSEQRLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKAATRQRRGRAGRVQPGECYHLYPRCVYDAFSDYQLPELLRTPLQSLCLQIKTLQLGSITEFLSRALQAPEPLSVENAIEYLKIIGALDENENLTVLGQKLAMLPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKSQFAARDYSDHLALVRAYEGWKDAETQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLVNNKPETYNAWSHEVHLLRAVICAGLFPAISSVVNKDKSIALKTMEDGQVLLYSSSVNGCVPRIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELAKTYLSLKMELEELIQKKLLDTTRETQSHSELLSAVRLLVSEDHCEGRFVFGRQVLPQVKKEPNSKSGVEGENSKNQLQTFLNRAGHESPTYKTKQLKNLQFRSTVIFNGLNFAGQPCSSKKLAEKSAAAEALLWLKGDSHSSDDINHASVLLKKSNKKSRKKSLSSAKWS 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00703 1175 FunFam DExH-box ATP-dependent RNA helicase DExH3 232 457 - -
Spst3g00703 1175 CDD DEXHc_RHA-like 295 455 - -
Spst3g00703 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 858 IPR027417 -
Spst3g00703 1175 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 898 980 IPR011709 -
Spst3g00703 1175 Pfam DEAD/DEAH box helicase 289 440 IPR011545 GO:0003676|GO:0005524
Spst3g00703 1175 Gene3D - 1061 1145 - -
Spst3g00703 1175 MobiDBLite consensus disorder prediction 1158 1175 - -
Spst3g00703 1175 Pfam Helicase conserved C-terminal domain 547 678 IPR001650 -
Spst3g00703 1175 Gene3D - 542 697 IPR027417 -
Spst3g00703 1175 SMART helicmild6 573 679 IPR001650 -
Spst3g00703 1175 SMART ha2_5 741 832 IPR007502 GO:0004386
Spst3g00703 1175 FunFam DExH-box ATP-dependent RNA helicase DExH3 541 697 - -
Spst3g00703 1175 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 289 456 IPR014001 -
Spst3g00703 1175 Gene3D - 232 457 IPR027417 -
Spst3g00703 1175 FunFam Putative ATP-dependent RNA helicase DHX36 721 826 - -
Spst3g00703 1175 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1077 1142 IPR014720 -
Spst3g00703 1175 Pfam Helicase associated domain (HA2) 742 827 IPR007502 GO:0004386
Spst3g00703 1175 Pfam Double-stranded RNA binding motif 1078 1140 IPR014720 -
Spst3g00703 1175 PANTHER ATP-DEPENDENT RNA HELICASE 228 1025 - -
Spst3g00703 1175 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 545 719 IPR001650 -
Spst3g00703 1175 SMART DRBM_3 1078 1141 IPR014720 -
Spst3g00703 1175 SUPERFAMILY dsRNA-binding domain-like 1075 1146 - -
Spst3g00703 1175 MobiDBLite consensus disorder prediction 1155 1175 - -
Spst3g00703 1175 SMART ultradead3 277 470 IPR014001 -
Spst3g00703 1175 Gene3D - 721 823 - -
Spst3g00703 1175 CDD SF2_C_RHA 536 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00703 Spst-Chr3 10424130 10443744 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00703 K14442 - gmx:100791006 2044.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00703 3 10424130 10443744 Spst3g00703 3 10424130 10443744 ECH