Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00653 ATGTCTCGCCCCAAGTCGTTGTTTATCTCTCTCGCCCTCTCTTTCTCTCTCCTCAATCTCTCTCTCTCCGTCGCCGCACGGCAATTCGTGCTCGTGCTCTCTCAGGAAGACTTCAAGGACGACCCTCCCGCTGAACTCGACTCCTCCGCCGAGTGGGATGAACTCGGCGATGGAGACGCCCACAAATCCGAGGAGGACCTCGACCCTGGCTCATGGCGCCCCATCTTTGAGCCCCCCGCTGGAGACCCCCAACCGATCCCGGAATCCGACGCTGCCTACTACTCCGCCGTCGATAAGCTCATGTCCGGACACCCTGCCCTCATCGAGAACGGCGCCGCCGAGATCGCCGCAGCGGCCGATACCGGCCACCCCGCTGCCCAATCGGTTCTAGGGTTTTTGTGGGAGATGGGTCTTTTGAGAGAACGAAGCAAGGGGAAGACGTTCTTATACCACCACTTCGCCGCCGAGGGTGGCAACATGCAGTCCAAAATGGCTTTGGCTTATAAATATACGCGCCAAGACATGTTTGATAAAGCTGTTAATCTGTATGCTGAATTAGCTGAAGTGGCTGTGAATAATTTTCTGATTTCGAAAGATTCCCCTGTGATTGAACCGGTCAGGCTTCACAATGGGGCTGAGGAGAACAAGGAGGCTCTTAGAAAATCGAAGGGAGAAGAAGACGAGGACTTTCAGATACTCGAGTATCAAGCCCAGAAGGGAAATGCTGCTGCCATGTACAAAGTTGGTCTCTTTTACTACTTTGGCCTCAGGGGATTGAGGCGTGATCATTCCAAAGCGCTGTCATGGTTTTTGAAGGCAGTGGAGAAGGGAGAGCCACGATCTATGGAGCTTCTTGGAGAGATCTATGCTAGGGGAGCAGGTGTTGAGAGAAACTACACCAAAGCGTTTGAGTGGCTCACGCTTGCTTCCAGGCACCAGCTGTATTCTGCTTATAATGGGATGGGATATTTGTATGTCAAAGGCTATGGCGTTGACAAGAAGAATTACACTAAAGCAAAGGAGTATTTTGAGAAGGCTGCAGAGAATGAGGAGGTTGGGGGGCACTATAACCTAGGTGTCATGTATCTCAAGGGGATTGGAGTTAAGAGGGATGTTAAGCTGGCTTGTAAGTTCTTCGTGGTGGCTGCTAACCATGGTCAACCAAAGGCGTTCTACCAGTTAGCTAAGATTTTCCACAATGGTGTTGGGTTCAAGAAGAATATTCCCTTGGCTACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAATCATACTTAAAAGGTGATCTTGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGACAAATATGGGGAACGTAGCATGTGCATGGGTGAATCTGGATTATGCACTGATGCAGAAAGGCATCAGAGGGCACATTCTCTATGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCGTATTACTATGGTCGGGGTACGGCCAGGGATTATGATCGGGCTGCTGAGGCTTACATGCATGCCAAATCACAATCTAATGCACAAGCCATGTTCAATCTTGGATACATGTACGAGCATGGCCAAGGACTTCCGTTTGACCTTCATCTAGCCAAGCGTTACTATGATGAAGCTCTAGATCATGATCGTGCAGCAAAGTTGCCAGTCACGCTAGCTCTTTCAAGCTTGTGGATTCGTAAAAACTATGCTGACAGTTTCATGGTCCACGTGATTGATTCATTGCCAGAAGTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTATGGAGGAGGGAAATGCTACAATTCTGACCCTCTTTGCATGCCTCATAACTGTGCTGTATCTTCGCGAGAGACAACGAAGGCAAGCCGGTGTTGCAGTTGGAGAGGTGGCTCAGCCAAATCACCCCAACGAGCTTGGTGTACCTGCACACTAG 2016 0.4955 MSRPKSLFISLALSFSLLNLSLSVAARQFVLVLSQEDFKDDPPAELDSSAEWDELGDGDAHKSEEDLDPGSWRPIFEPPAGDPQPIPESDAAYYSAVDKLMSGHPALIENGAAEIAAAADTGHPAAQSVLGFLWEMGLLRERSKGKTFLYHHFAAEGGNMQSKMALAYKYTRQDMFDKAVNLYAELAEVAVNNFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASRHQLYSAYNGMGYLYVKGYGVDKKNYTKAKEYFEKAAENEEVGGHYNLGVMYLKGIGVKRDVKLACKFFVVAANHGQPKAFYQLAKIFHNGVGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGDLGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGLCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYDRAAEAYMHAKSQSNAQAMFNLGYMYEHGQGLPFDLHLAKRYYDEALDHDRAAKLPVTLALSSLWIRKNYADSFMVHVIDSLPEVYPKLEAWVENVLMEEGNATILTLFACLITVLYLRERQRRQAGVAVGEVAQPNHPNELGVPAH 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00653 671 Pfam Sel1 repeat 540 573 IPR006597 -
Spst3g00653 671 Pfam Sel1 repeat 437 455 IPR006597 -
Spst3g00653 671 Pfam Sel1 repeat 506 528 IPR006597 -
Spst3g00653 671 Pfam Sel1 repeat 242 277 IPR006597 -
Spst3g00653 671 Pfam Sel1 repeat 316 349 IPR006597 -
Spst3g00653 671 Pfam Sel1 repeat 392 422 IPR006597 -
Spst3g00653 671 Pfam Sel1 repeat 355 386 IPR006597 -
Spst3g00653 671 Pfam Sel1 repeat 280 312 IPR006597 -
Spst3g00653 671 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 207 318 - -
Spst3g00653 671 MobiDBLite consensus disorder prediction 54 71 - -
Spst3g00653 671 SUPERFAMILY HCP-like 223 349 - -
Spst3g00653 671 SMART sel1 315 351 IPR006597 -
Spst3g00653 671 SMART sel1 540 575 IPR006597 -
Spst3g00653 671 SMART sel1 124 159 IPR006597 -
Spst3g00653 671 SMART sel1 352 387 IPR006597 -
Spst3g00653 671 SMART sel1 242 278 IPR006597 -
Spst3g00653 671 SMART sel1 279 314 IPR006597 -
Spst3g00653 671 SMART sel1 388 423 IPR006597 -
Spst3g00653 671 SMART sel1 504 539 IPR006597 -
Spst3g00653 671 Gene3D Tetratricopeptide repeat domain 206 317 IPR011990 GO:0005515
Spst3g00653 671 Gene3D Tetratricopeptide repeat domain 108 198 IPR011990 GO:0005515
Spst3g00653 671 Gene3D Tetratricopeptide repeat domain 432 592 IPR011990 GO:0005515
Spst3g00653 671 SUPERFAMILY HCP-like 117 190 - -
Spst3g00653 671 Gene3D Tetratricopeptide repeat domain 318 431 IPR011990 GO:0005515
Spst3g00653 671 SUPERFAMILY HCP-like 333 463 - -
Spst3g00653 671 SUPERFAMILY HCP-like 435 574 - -
Spst3g00653 671 MobiDBLite consensus disorder prediction 40 88 - -
Spst3g00653 671 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 2 654 IPR044623 GO:0030433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00653 K14026 - gmx:100787823 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00653 3 10000891 10004908 Spst3g00653 3 10000891 10004908 ECH