Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00469 ATGTGCAGCATTTGCTTAGCACAAAACTCCCCGGAAGATTTCCTTAAAGGGCACAACGAAGCTCGCGCAGAGGTTGGAGTTAAACCACTGACATGGAACGAATCCCTTGTAGCCTATGCTCAGAAATATGCGGACTCGAAGAAAAAGGACTGCGAATTGGAGCACTCTATGGGGCCTTATGGGGAGAACCTGGCAGAGGGTTATGGCGATTTTAGTGGCGAGGATTCAGTGAAACTGTGGGTAGCGGAGAAACCCTTCTATGACACGGAGTCCAAAAAGTGTGTTAAAGATGAGTGTTTGCATTACACTCAGGTGGTTTGGAACACCACAGAGAGTGTTGGTTGTGCCAGAAGCAAGTGTGCCAATGGCTGGATGTTTGTCATCTGCAATTATTACCCACCAGGGAATTACATAGGCTTAGCACCTTACTAA 432 0.4722 MCSICLAQNSPEDFLKGHNEARAEVGVKPLTWNESLVAYAQKYADSKKKDCELEHSMGPYGENLAEGYGDFSGEDSVKLWVAEKPFYDTESKKCVKDECLHYTQVVWNTTESVGCARSKCANGWMFVICNYYPPGNYIGLAPY 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00469 143 Gene3D CAP 9 143 IPR035940 -
Spst3g00469 143 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 13 139 IPR001283 -
Spst3g00469 143 ProSitePatterns CRISP family signature 2. 126 137 IPR018244 GO:0005576
Spst3g00469 143 FunFam Putative pathogenesis-related protein 1 8 143 - -
Spst3g00469 143 PRINTS Allergen V5/Tpx-1 family signature 76 89 IPR001283 -
Spst3g00469 143 PRINTS Allergen V5/Tpx-1 family signature 30 48 IPR001283 -
Spst3g00469 143 PRINTS Allergen V5/Tpx-1 family signature 99 115 IPR001283 -
Spst3g00469 143 PRINTS Allergen V5/Tpx-1 family signature 126 139 IPR001283 -
Spst3g00469 143 SUPERFAMILY PR-1-like 9 143 IPR035940 -
Spst3g00469 143 Pfam Cysteine-rich secretory protein family 17 131 IPR014044 -
Spst3g00469 143 CDD CAP_PR-1 11 143 - -
Spst3g00469 143 SMART SCP_3 9 139 IPR014044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00469 Spst-Chr3 7905802 7906233 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00469 K13449 - gmx:100527778 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00469 3 7905802 7906233 Spst3g00469 3 7905802 7906233 ECH
Spst3g00469 3 7905802 7906233 Spst6g00648 6 5864658 5865149 PCT