Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00461 ATGTCTATAACCCACAACCTCGCCACTTCACTCTCTTCTTCTTCCTCTGCTTTCTTAGCTCCCCCTTCCTTCAATTCTAGGGGACATGTTTCATTGCCTGTGAAGAGCGTGGGCATTTGCAAATGCGTTGCCGCACCCGAGGCTGAGACTGCCTACAAGACAAGGGTCATTCGCAATCCAAATATGGGAAAACTTCAAGCTGGCTATCTATTTCCTGAGATTGCTAGAAGAAGGTCTGCACACTTGCTGAAGTATCCTGATGCTAAAGTTATAAGCCTTGGAATTGGTGATACTACTGAACCTATTCCTGAAGTTATAACTGATGCAATGTCAAAGAGATCACATGCATTGTCAACTTTTGAAGGATATAGTGGGTATGGAGCTGAACAAGGAGAAAAGCCATTAAGAAGCGCAATTGCTTCAACATTTTACAGCGATCTTGGCATAGAAGAGGATGACATATTTGTCTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTTGGGTCAAATGTAAAAATGGCTGTTCAAGACCCTTCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACTGGCCTCTACCAGAAGGATGTTCAGAAGTTTGCAAACATTGAATACATGAGGTGTAGTCCGGAAAATGGTTTCTTCCCTGATTTGTCTTCAATTTCTCGAGCAGACATAATCTTTTTTTGTTCGCCAAACAATCCTACTGGTGCTGCAGCAACAAGGGAACAATTGACCCAACTAGTTAAGTTTGCTAAGGACAATGGTTCTATCGTAATCCATGATTCAGCTTATGCAATGTATATTTCTGGTGACAGCCCACGTTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCCATGGAGACTTCCTCATTTAGCAAGTATGCTGGGTTCACTGGAGTCCGATTAGGTTGGACTGTGATTCCAAAGCAGTTGCTGTTTTCTGATGGATTTCCTGTTGCCAGGGACTTCAACCGTATTGTATGCACTTGTTTCAATGGTGCATCAAATATTTCCCAGGCAGGTGGTCTGGCTTGCCTTTCACCAGAAGGTCTTAAGGCTATGCGAGATGTTATTGGATTCTACAAAGAAAATACCAACATAATTGTGGAGACATTTGATTCTCTTGGGTTTAAAGTGTACGGAGGGAAAGATGCGCCATATGTGTGGGTTCATTTCCCAGGGCGAAGCTCATGGGATGTATTTGCAGAGATTCTTGAGAAGACTCATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCCGGTGGTGAAGGTTTTGTCAGGGTTAGTGCCTTTGGTCACAGGGAAAACATCTTGGAGGCATGCAGAAGGTTCAAGCAGTTATACAAGTGA 1377 0.4357 MSITHNLATSLSSSSSAFLAPPSFNSRGHVSLPVKSVGICKCVAAPEAETAYKTRVIRNPNMGKLQAGYLFPEIARRRSAHLLKYPDAKVISLGIGDTTEPIPEVITDAMSKRSHALSTFEGYSGYGAEQGEKPLRSAIASTFYSDLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVQKFANIEYMRCSPENGFFPDLSSISRADIIFFCSPNNPTGAAATREQLTQLVKFAKDNGSIVIHDSAYAMYISGDSPRSIFEIPGAKEVAMETSSFSKYAGFTGVRLGWTVIPKQLLFSDGFPVARDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMRDVIGFYKENTNIIVETFDSLGFKVYGGKDAPYVWVHFPGRSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILEACRRFKQLYK 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00461 458 Gene3D Aspartate Aminotransferase, domain 1 70 454 IPR015422 GO:0003824
Spst3g00461 458 Pfam Aminotransferase class I and II 89 453 IPR004839 GO:0009058|GO:0030170
Spst3g00461 458 Hamap LL-diaminopimelate aminotransferase [dapL]. 57 456 IPR019942 GO:0008483
Spst3g00461 458 Gene3D - 100 357 IPR015421 GO:0003824
Spst3g00461 458 PANTHER AMINOTRANSFERASE 6 458 IPR019942 GO:0008483
Spst3g00461 458 FunFam LL-diaminopimelate aminotransferase, chloroplastic 343 454 - -
Spst3g00461 458 NCBIfam LL-diaminopimelate aminotransferase 57 455 IPR019942 GO:0008483
Spst3g00461 458 CDD AAT_like 91 455 - -
Spst3g00461 458 SUPERFAMILY PLP-dependent transferases 69 453 IPR015424 -
Spst3g00461 458 FunFam LL-diaminopimelate aminotransferase, chloroplastic 100 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00461 Spst-Chr3 7713926 7720183 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00461 K10206 - gmx:100801405 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00461 3 7713926 7720183 Spst3g00461 3 7713926 7720183 ECH