Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00454 ATGGCTTCCTCGGAGATCGAGGTGGTATCATCATCATCATCGGTCTCCAAACCCAACGACCTGCCTCTTATCCTCGACATCTTCACCGCCTCTGTTCACGGCGACTTCAACAAACTGAGAACCTTCGTCGAACAACACGGGGCCTCCGTTTCCGTTCCCGATGCTCATGGCTACTACGCTCTTCAATGGGCTTCGCTTAATAATTTCCACGACATTGTGCACTACCTCATTCAGCATGGAGCGGATGTGAATGCTAAAGACAACATGCAACAAACCGCATTGCATTGGGCAGCAGTTCGTGGTTCAACTGCAGCTGCTGATGTGCTTGTGGAAAATGGTGCACGTGTTGAAGCTGCAGACATAAATGGATACCGGGCAGTTCATGTTGCTGCACAGTATGGACAGACAGCTTTCTTAAATCACATTATAGTAAAGCACCATGCCGATTTTGATGTGCCTGATAATGATGGGAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGACACAATAAGATTGCTTCTATTTAGAGATGCATCTCAAGGAAGACAAGATAAAGATGGTTGTACACCGTTGCACTGGGCTGCATTAAGAGGAAATGCAGAGGCATGCGCCGTGCTTGTACATGCAGGCACAAAGGAAGAGTTGATGGTGAAGGACAATGCTGGACACACACCTGTACAGCTTGCATATGATAAAGGTCATCGACATGTCGCCCCTTTCCTTTCAAATCAACAACGGGCTCATAGCAACTACTGGAAAGGGAAACTTTGTAGTGGGGTGGTGACAGATATTGGTTATGCTCCCATCTTATTGTGTGTTATGATCATTCTCATGATCCTCTTCATCAACTCAGTTATTGCAGCTCCTAACCTTGGAAAGATTACTGCTATTGCTGGACTTTGGGCATGGACTGCACTTTCTCTAGAAGTTGCTGCCCTGATCATGTTCTATAGGTGTAGTAGGGAGTGCATAACCTTGCGTGTAGTTGACTGGAGAGAACAATTGTTTTCAGAACCTATTGGTAATCGCATCAACACATTCATCATATGGCACAAGATTTCGTACACCAAGGAGCTTGTCTATAATGTTCTTGATCTGAGACAAGAATTCATGCATCGTTTTCCTGTCCACAGTCCACAGAGAGAACCAATTTCGTCAACAATGATGGAACCCAGGTGGGCAATATTTGATCTTGTACTTCCCAAGCTTCTACGGGGGATTAACATTATCTTGGATCTTTATGTGAGCAAAGATCCTGGTTATATAAAACGGCTGGGAGACTTGTCTCAAAGTGATAAAGAGGATCCTTTATTGAATATTGATCTCAATAGCTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGCCCTACTTGTAAGCGATGTGTGGAACAATTCGATCACCACTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAGGGATTTCTTTATTTTTATCTGCCTGGGAACTTTGACTTCTTCAGTTTCTGCTGCCGTTGCAGTTCAAAGAAATGATAGGGTCATTTGTGGAGAAAGAGGCAAGTTTCTGTGCCGGAAAACCCATCATATCATAAGCAGGAATTCAATTATTGCTCGAAATGTGACCACAAATGAACTGGTAAATTCCTCCCGCTATGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTTGGTGGAAGAATTGTGCTGACTTCCTTTTTCTGGGATACACAAATGATGATGAAATTGCTTGGCCCCGATTACAGCAGGTGGTGTTGAATCATATTCTAGATAGCGTGAATAAAGTAAACGGCAGGAATGGATGTCTCCATAGGCAATACCAGGCAGTAGAATAA 1911 0.4411 MASSEIEVVSSSSSVSKPNDLPLILDIFTASVHGDFNKLRTFVEQHGASVSVPDAHGYYALQWASLNNFHDIVHYLIQHGADVNAKDNMQQTALHWAAVRGSTAAADVLVENGARVEAADINGYRAVHVAAQYGQTAFLNHIIVKHHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNAEACAVLVHAGTKEELMVKDNAGHTPVQLAYDKGHRHVAPFLSNQQRAHSNYWKGKLCSGVVTDIGYAPILLCVMIILMILFINSVIAAPNLGKITAIAGLWAWTALSLEVAALIMFYRCSRECITLRVVDWREQLFSEPIGNRINTFIIWHKISYTKELVYNVLDLRQEFMHRFPVHSPQREPISSTMMEPRWAIFDLVLPKLLRGINIILDLYVSKDPGYIKRLGDLSQSDKEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSSVSAAVAVQRNDRVICGERGKFLCRKTHHIISRNSIIARNVTTNELVNSSRYDYLRGPDGRFRNPYNHGWWKNCADFLFLGYTNDDEIAWPRLQQVVLNHILDSVNKVNGRNGCLHRQYQAVE 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00454 636 SMART ANK_2a 156 185 IPR002110 GO:0005515
Spst3g00454 636 SMART ANK_2a 189 218 IPR002110 GO:0005515
Spst3g00454 636 SMART ANK_2a 224 254 IPR002110 GO:0005515
Spst3g00454 636 SMART ANK_2a 56 85 IPR002110 GO:0005515
Spst3g00454 636 SMART ANK_2a 122 152 IPR002110 GO:0005515
Spst3g00454 636 SMART ANK_2a 89 118 IPR002110 GO:0005515
Spst3g00454 636 Gene3D - 9 141 IPR036770 -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat region circular profile. 156 182 - -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat profile. 189 221 IPR002110 GO:0005515
Spst3g00454 636 FunFam S-acyltransferase 143 251 - -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Spst3g00454 636 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 10 597 - -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Spst3g00454 636 Pfam Ankyrin repeats (3 copies) 33 119 IPR002110 GO:0005515
Spst3g00454 636 Pfam Ankyrin repeats (3 copies) 187 246 IPR002110 GO:0005515
Spst3g00454 636 Pfam Ankyrin repeats (3 copies) 120 184 IPR002110 GO:0005515
Spst3g00454 636 SUPERFAMILY Ankyrin repeat 27 246 IPR036770 -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat region circular profile. 56 88 - -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat region circular profile. 189 213 - -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Spst3g00454 636 Pfam DHHC palmitoyltransferase 457 528 IPR001594 GO:0016409
Spst3g00454 636 FunFam S-acyltransferase 12 142 - -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat profile. 122 155 IPR002110 GO:0005515
Spst3g00454 636 ProSiteProfiles DHHC domain profile. 457 507 - -
Spst3g00454 636 Gene3D - 142 256 IPR036770 -
Spst3g00454 636 ProSiteProfiles Ankyrin repeat profile. 156 188 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00454 Spst-Chr3 7646057 7666526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00454 30 236 Miscellaneous Gene Families AT2G31820 26.267 1.98e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00454 K20032 - gmx:100807263 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00454 3 7646057 7666526 Spst3g00454 3 7646057 7666526 ECH