Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02948 ATGTCGTTTCGTTCGGAGAACGAGAACCCTAACCCAACTCCAACTCCCACTCCGCCGGCGAAGAAGCGGTGGTCGGACATATGGGCGAAATCGAAGCCCCTAAACCAAATGGTGATGTCGATGAAGCTTCACTCCCTCTCTCCTCGCCTCGCTAACAAAGCCAAACCCACACTCTCTCCTTTCCCCGTCATCTCCGACCGAACCCTTCTCTTCTCCGACGAGCTTCTCCTCAAAATCCTCGCGCTTATCTCCGACTCCGCCGCGCAGCGGAACTCAAATTCTCTGGTCTGCAAGCGCTGGCTCAATCTCCAAGGCCGTCTCGTCCGCTCCCTCAGAATCTCCGACTGGAACTTCCTCCTCTCCGGCAGACTCATCCACCGCTTCCCCAATCTCAACCATGTCGATTTGCTCTCCGCCGCCTTCATTTCCTCTCGCAGTTCCGCCATTCTCTTCAGCCACCGCCTCCTCTCCATGCACCTCGATTCCAGCCTCTCCCCCAATTGGTGCTACTGCGAGGAAAACATGCTCCCGGTTGAAGTCATCGACAACGGCCTCTCCACTCTGGCTGGCGGCTGCCCTAACTTGCGCCGCCTCCACGTCATCGGCGCCAGCGAGATGGGGCTGCTGAGCGTCGCTGAGGAGTGTCCCACTCTGCAGGAACTCGAACTGCAGCGCTGCAGCGACAACGTTTTGCGCGGGATCGCGGCCTGTACGAATCTTCAGATTCTGAAGCTCGTTGGGCATGTTGATGGATTCTACAATTCAGTGGTTTCTGATATTGGGTTGACAATTCTGGCTCAGGGGTGTAAGAGACTGGTGAAGTTGGAGCTTTGTGGGTGTGAAGGGAGTTTTGATGGGATTAAGGCTATTGGAAAGTGTTGCTTAATGTTGGAGGAGTTGACGTTTTCTGATCATAGGATGGATGATGGATGGCTTGCTGGTATCTCTTTTTGTGAGAATTTGAAGACTTTGAGATTTCAGTCTTGTAAGAGGATCGATCTCAATCCTGGAATGGAGGATTATTTGGGTTGTTGCCCTGCTCTTGAACGGTTGCATTTGCAGAAATGTCAGTTGCGGGATAAGAAGGGCGCTTCGGCTTTGTTTTCTATATGCAGAGCTGTCAGGGAGATTGTTCTTCAGGACTGTTGGGGATTAGATGATAGCATCTTCTGTTTTGCAATGTTGTGCAGGCGGGTAAAGTTGTTTTACTTGGAAGGGTGCTCATTGCTAACGACGGAAGGTTTAGAGTCTGTAATTCATTCGTGGAAGGAGCTTCAGAGCCTTAGAGTAGTGTCATGTAAGAATATAAAGGATTATGAGATCTCTCCTGCGCTCGCAACCTTATTTACCACTCTCAAGGAGTTGAGATGGAGCCCTGATACCAAATCACTTCTTCCATCAAGTGTTACGGGGATAACCATGGGAAAGAAAGGTGGTAAATTTTTCAAAAGGGCACGATGA 1461 0.5086 MSFRSENENPNPTPTPTPPAKKRWSDIWAKSKPLNQMVMSMKLHSLSPRLANKAKPTLSPFPVISDRTLLFSDELLLKILALISDSAAQRNSNSLVCKRWLNLQGRLVRSLRISDWNFLLSGRLIHRFPNLNHVDLLSAAFISSRSSAILFSHRLLSMHLDSSLSPNWCYCEENMLPVEVIDNGLSTLAGGCPNLRRLHVIGASEMGLLSVAEECPTLQELELQRCSDNVLRGIAACTNLQILKLVGHVDGFYNSVVSDIGLTILAQGCKRLVKLELCGCEGSFDGIKAIGKCCLMLEELTFSDHRMDDGWLAGISFCENLKTLRFQSCKRIDLNPGMEDYLGCCPALERLHLQKCQLRDKKGASALFSICRAVREIVLQDCWGLDDSIFCFAMLCRRVKLFYLEGCSLLTTEGLESVIHSWKELQSLRVVSCKNIKDYEISPALATLFTTLKELRWSPDTKSLLPSSVTGITMGKKGGKFFKRAR 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02948 486 CDD F-box_AtTIR1-like 70 106 - -
Spst2g02948 486 PANTHER UNCHARACTERIZED 71 444 - -
Spst2g02948 486 SMART LRR_CC_2 237 268 IPR006553 -
Spst2g02948 486 SMART LRR_CC_2 345 373 IPR006553 -
Spst2g02948 486 SMART LRR_CC_2 128 153 IPR006553 -
Spst2g02948 486 SMART LRR_CC_2 269 293 IPR006553 -
Spst2g02948 486 SMART LRR_CC_2 192 217 IPR006553 -
Spst2g02948 486 SMART LRR_CC_2 396 421 IPR006553 -
Spst2g02948 486 Gene3D Ribonuclease Inhibitor 207 457 IPR032675 -
Spst2g02948 486 MobiDBLite consensus disorder prediction 1 23 - -
Spst2g02948 486 FunFam F-box protein At5g51380 64 333 - -
Spst2g02948 486 FunFam F-box protein 334 468 - -
Spst2g02948 486 Gene3D - 67 106 - -
Spst2g02948 486 SUPERFAMILY RNI-like 99 247 - -
Spst2g02948 486 SUPERFAMILY RNI-like 253 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02948 Spst-Chr2 29241390 29243427 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02948 K10268 - gmx:100812193 793.497