Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02929 ATGGCGTGCATCAAAGGGGTGAATCGATCGGCGTCGGTGGCGCTGGCGCCTGACGCGCCGTACCTGGCGGCCGGGACCATGGCCGGCGCCGTTGATCTGTCCTTTAGCTCGTCCGCAAATCTCGAGATATTCAAGCTCGATTTTCAGTCCGACGATTGGGAACTGCCTCTCGTCGCCGAGTGCCCGAGTTCCGACCGCTTCAACCGTCTCACGTGGGGGAAGAACGGTTCTGGTTCCGATGGATTCGCTCTCGGCCTCGTTGCCGGTGGATTGGTGGATGGCAACATTGACATCTGGAATCCTCTCACCCTGATCCGAAATACGGTTCGTGGTCTTGAGTTTAATGTCATTGCACCAAATCTTCTTGCATCCGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGTCAATCCTTCTGAGCCTACACATTTCCCACCACTAAAGAGTACTGGCTCTGCTTCCCAGGGAGAAATTTCATTCTTATCTTGGAACAGTAAAGTCCAACACATATTAGCTTCTACTTCATATAATGGAACCACAGATTCAGTTAGAAGGCGGTGTTCTGTTTTGCAGTGGAATCCCGATGTTGCCACACAACTTGTCGTTGCATCAGATGAAGATGGCTCTCCTTCTTTGAGGCTTTGGGATATGAGGAACATAATTTCACCGATAAAGGAGTTTGTGGGACACACTAGAGGTGTAATTGCAATGTCATGGTGTCCCAATGATAGCTCTTATTTGCTTACCTGTGGTAAAGATAGCCGAACTATATGCTGGGACATGATTTCCGGAGAGATTGCCTATGAATTGCCAGCTGGGACCAACTGGAATTTTGATGTGCATTGGTATCCTAAGATACCTGGAGTAATATCAGCATCTTCCTTCGATGGAAAAATTGGCATATATAATATTAAGGGTTGCCGTCAGAATAGTACTGGGGAAAATGATTTTGGTGCAGTACCGCTGAGAGCACCAAAATGGTATAAACGTCCTGCTGGTGTGTCTTTTGGCTTTGGAGGCAAACTTGTGTCGTTTCATCCCAGGGCATCTTCTGCAGGTTCTCCTGCTGGTGCTTCTGAGGTTTATGTGCATAATTTGGTCACTGAAAATGGTCTCGTGACTCGTTCTTCTGAATTTGAAGCGGCAATACAGAATGGGGAGAGGTCTTTATTGAGGGTTTTATGTGATAAAAAATCTCAGGAATCAGAATCTATGGAGGAAAGAGAAACATGGGGCTTTTTAAAGGTTATGTTTGAAGATGATGGGACTGCACGGACAAAACTTCTTTCACATCTTGGTTTCAATGTACCTAGTGAATCAAAAGACACAGTTAATGATGATCTTTCTCAAGATGTAAATGCACTTGGAGTCGAGGATGCAACTGTTGACAATGCTGGACAGGCCACTAATGAAACCTCTATGTTCTCTATTGATAATGGGGAGGATTTCTTTAACAATCTCCCCAGTCCTAAAGCTGATACCCCTTTATCTACTTCTGCTGGCAACTTTGTTGCAGAAAATGCCAATGGTTCCGAGAAAATTCAAGATGATGCAGAAATGGAGGAGAGCAGTGACCCTTCATTTGATGATAGTGTTCAGCATGCTTTAGTTGTTGGGGACTATAAGGGTGCAGTTATGCAATGCATTTCTGCAAATAAATGGGCTGATGCATTAGTTATTGCTCATGTTGGGAATGCTTCCTTATGGGAAAGTACACGTGATCAATACCTTAAGATGGTTCGATCACCATACTTGAAGATTGTATCAGCAATGGTGAGCAATGATCTCTTGAGCTTAGTGAACACTCGGCCTCTGAAATTCTGGAAAGAAACCCTTGCTCTTCTTTGTAGTTTTGCTCAGAGAGATGAATGGACTATGCTTTGTGATACACTTGCTTCAAAACTCATGGGGGCTGGCAATACATTGGCTGCAACTCTGTGTTATATATGCGCTGGAAATATTGATAAAACTGTTGAAATTTGGTCAAGGAGCCTGTCAAATGAATACGAGGGGAAATCTTATGTAGACCTTCTTCAGGATTTAATGGAAAAGACTATTGTTCTTGCCTTGGCAACTGGGCAGAAGCGGTTTAGTGCTTCCCTGTGCAAGCTTGTTGAGAAATATGCTGAAATTTTGGCTAGTCAAGGGCTATTGACTACAGCAATGGAGTATTTAAAACTTCTGGGTTCTGAAGAACTGTCACCTGAGCTTACGATTTTAAAAGATCGAATTGCACTTTCTACAGAACCTGAGAAAGACTTCAAAACCACTGCTTTTGAAAATGCTCGAGTACAAAGTGGGTCCTATCATGGTGCCGATAACTCCAATTATAATAGAAATTATTATCAGGAGTCAATATCCACTCAAGTGCAGCATGGTGTTTCTGGAATTCAATATCCTGAAAGCTATCAACAGCCATTTGATCCTAGATATGGAAGAGGTTATGGTGCTGCTACTCCACCGCAGCAATCTCAACAGCCTAATTTGTTTGTTCCACCACAGGCTACTCAAGTTGTACAAACTCCCCAGCTGAATTTCTCAAACACTGCTGTTGCACCACCTCCTTTGAGAACTTTTGATCCTCAAACTCCTCCCGTGCTAAGAAATGTGGAGCAATATCAGCAGCCCACATTGGGTTCTCAGTTGTACAATACAACCACCAATCCACCTTACCAGCCTACACCCTCTGCTACATCACAAGTGGGCTTGGTTCATGGCCACAACCTGTCACAAGTTGCGGCCCCTACCCCAAATCCGATGGGATTCATGCCAGTCTCCAGTTCTGGTGGTGTCCAAAGACCTGGGGTGGGATCAGTACAACCTCCCAGTCCCCCTCAAGTGCAACCTGTGCAACCAGTTGCTGCACCACCAGCTCCACCTCCTACCCTGCAGACTGCTGATACTTCAAAAGTACCTGGGCATCAAATGCCAATTGTCACAACATTGACAAGACTCTTCAACGAGACATCAGATGCTCTGGGGGGTTCCCGTGCAAACCCAGCCAAGAGGAGGGAGATAGAAGACAACTCAAAGAGACTTGGTGGGTTGTTTGCCAAGTTGAATAGTGGAGACATATCCAAAAATGCTTCTGATAAGCTCCTTCAGCTTTGTCAGTCATTAGACAATGGTGATTTTGGTACTGCCCTACAAATCCAGGTTCTTCTTACTACTACCGAGTGGGATGAATGCCAGTCCTGGTTAGGTTCACTCAAGCGGATGATCAAGACAAGGCAGAGCGTGAGACTAAGTTAA 3255 0.4504 MACIKGVNRSASVALAPDAPYLAAGTMAGAVDLSFSSSANLEIFKLDFQSDDWELPLVAECPSSDRFNRLTWGKNGSGSDGFALGLVAGGLVDGNIDIWNPLTLIRNTVRGLEFNVIAPNLLASGAEDGEICIWDLVNPSEPTHFPPLKSTGSASQGEISFLSWNSKVQHILASTSYNGTTDSVRRRCSVLQWNPDVATQLVVASDEDGSPSLRLWDMRNIISPIKEFVGHTRGVIAMSWCPNDSSYLLTCGKDSRTICWDMISGEIAYELPAGTNWNFDVHWYPKIPGVISASSFDGKIGIYNIKGCRQNSTGENDFGAVPLRAPKWYKRPAGVSFGFGGKLVSFHPRASSAGSPAGASEVYVHNLVTENGLVTRSSEFEAAIQNGERSLLRVLCDKKSQESESMEERETWGFLKVMFEDDGTARTKLLSHLGFNVPSESKDTVNDDLSQDVNALGVEDATVDNAGQATNETSMFSIDNGEDFFNNLPSPKADTPLSTSAGNFVAENANGSEKIQDDAEMEESSDPSFDDSVQHALVVGDYKGAVMQCISANKWADALVIAHVGNASLWESTRDQYLKMVRSPYLKIVSAMVSNDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMGAGNTLAATLCYICAGNIDKTVEIWSRSLSNEYEGKSYVDLLQDLMEKTIVLALATGQKRFSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSEELSPELTILKDRIALSTEPEKDFKTTAFENARVQSGSYHGADNSNYNRNYYQESISTQVQHGVSGIQYPESYQQPFDPRYGRGYGAATPPQQSQQPNLFVPPQATQVVQTPQLNFSNTAVAPPPLRTFDPQTPPVLRNVEQYQQPTLGSQLYNTTTNPPYQPTPSATSQVGLVHGHNLSQVAAPTPNPMGFMPVSSSGGVQRPGVGSVQPPSPPQVQPVQPVAAPPAPPPTLQTADTSKVPGHQMPIVTTLTRLFNETSDALGGSRANPAKRREIEDNSKRLGGLFAKLNSGDISKNASDKLLQLCQSLDNGDFGTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVRLS 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02929 1084 FunFam Protein transport protein SEC31 homolog B 322 749 - -
Spst2g02929 1084 PANTHER SEC31-RELATED PROTEIN 3 1079 IPR040251 GO:0006888
Spst2g02929 1084 FunFam Protein transport protein SEC31 homolog B 968 1082 - -
Spst2g02929 1084 SUPERFAMILY WD40 repeat-like 12 306 IPR036322 GO:0005515
Spst2g02929 1084 MobiDBLite consensus disorder prediction 939 964 - -
Spst2g02929 1084 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 270 IPR001680 GO:0005515
Spst2g02929 1084 ProSitePatterns Trp-Asp (WD) repeats signature. 122 136 IPR019775 -
Spst2g02929 1084 SMART WD40_4 165 217 IPR001680 GO:0005515
Spst2g02929 1084 SMART WD40_4 264 304 IPR001680 GO:0005515
Spst2g02929 1084 SMART WD40_4 221 261 IPR001680 GO:0005515
Spst2g02929 1084 SMART WD40_4 101 135 IPR001680 GO:0005515
Spst2g02929 1084 SMART WD40_4 54 100 IPR001680 GO:0005515
Spst2g02929 1084 Gene3D - 1 306 IPR015943 GO:0005515
Spst2g02929 1084 MobiDBLite consensus disorder prediction 914 974 - -
Spst2g02929 1084 Gene3D - 322 749 - -
Spst2g02929 1084 Pfam Sec23-binding domain of Sec16 533 728 IPR024298 -
Spst2g02929 1084 Gene3D Functional domain of the splicing factor Prp18 972 1083 - -
Spst2g02929 1084 FunFam Protein transport protein SEC31 homolog B 1 306 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02929 K14005 - gmx:100788642 1937.92