Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02897 ATGGATGCTTACGAAGCTACAAGAATTGTGTTTTCAAGGATCCAAAACTTGGACCCTGAAAATGCATCCAAAATCATGGGTGTGCTTCTTCTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCCGAAGCACTTGTTCACTCAGTGATTGTCAAAGCCCGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCAACACCCTCCACTCCTCCTTCTCCTTCACCATTCCTTTCGAGGCAAAGCTCTACTTCTTCAAGGCTTAGTGGTATCAACCTCCCTCCCGCCCTCACCATTCCAAACCCTTCTTCAACTTCTTCTTCATGGCCTACTGTGTCTGAGCTTCAAACCCCAGATGATTTGATGAGCCCCAACCATTTGGTTGTTGGTTCTTCCACTTCTTCATCCTCCTTACCCTTTTATGTAAACGGAGGCTCAGATCCAATTGATGACTTCCAACTTCAAGACCAGCTTTCTTTCCTTAACGATGGTTCTCCTACTAGTACTGCACTTGCTCACAAGAACAACCCAGATTTGTTTTACCCACCTCACTCAGACTTGTCTTCCAGCCCTACTGCTGCAGCTGACCCTGCTCTCTTTCCTTCCTACGGTTGGGGAGGATCTCTTCATCGTAGGAGTTGCTCCGTCAATGATGCTTGTTTAGGCTCTGAGGACCCCAACTCCGGATTGGGGTGGAAGCCTTGTCTTTACTTTGCCAGAGGGTACTGTAAAAATGGGACTAGTTGTAGGTTCCTTCACGGTGGACTTGGAGATGCAGATGGTGCTGCTGCTGCAATGGTAGGTTCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAATCTTCTCAGCAGCATAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCACCCACTTTTCCATATTCCCCCAAGTGCATGAATTTGCTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTCGAAAGAAATGATTTTTCCTTGAACAGTCCTGGAATGGTAAACCCAGCTTCCAGACAGATCTACTTGACTTTCCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGTATTTATGGCCCTGTCCAAGACGTTAGGATCCCATACCAGCAGAAGCGAATGTTTGGTTTTGTGACTTTTGTATTTCCGGAGACCGTGAAGCTTATTCTATCTAAAGGAAATCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTTCCGGACAAGAAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCAACTGGACTAGATGCCAGAGACCAGTTCGATCTTCAACTTGGAGGCAGAATGTTCTACAATGCTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAGTTACAAAGTAGGAGACTAATGGGTCTGCAACTTCTTGATATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCCACCCACTCTCCTAACATGTTCAACCAAAATCTTGTTTTTCCTTCCTTTCACACTAGTTCAGAGGCCCCGAAGGAGAGTGGTTCAACTTCTGCTCCAGCTAGCACTTCATCAGTTTCTGCTGGTCAGCAGCCGGTCAACATATCTGTTGGCAAGGAAATGGTGGTCAATGGAGAGAATGGATATAAGGAAGGCAATGGGAAGCAGAGCTCCAGTCACGGAGATCGTGATTTGCAAGAATGCTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGACTTCATGGTTTCCTTCTCCAATGGACCTAATGAGGCCATTGAGGCAGATGCCTCAGGTGCATCTGCCAGCTCTAAATTTGGTACTAGCGCATTACTTCCACCATCTTCTGCTCTTGACATGGGAACTTTTAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTGGCCATGGAACTATTGGGATGTTAGCAGGAACCGGTGGACCAATTGACATTTAG 2124 0.4675 MDAYEATRIVFSRIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVIVKARKELGLPSNSPPTPSTPPSPSPFLSRQSSTSSRLSGINLPPALTIPNPSSTSSSWPTVSELQTPDDLMSPNHLVVGSSTSSSSLPFYVNGGSDPIDDFQLQDQLSFLNDGSPTSTALAHKNNPDLFYPPHSDLSSSPTAAADPALFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDADGAAAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMASPTFPYSPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVFPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPCGTPTGLDARDQFDLQLGGRMFYNAQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNLVFPSFHTSSEAPKESGSTSAPASTSSVSAGQQPVNISVGKEMVVNGENGYKEGNGKQSSSHGDRDLQECLEHNLPDSPFASPTKAAGDFMVSFSNGPNEAIEADASGASASSKFGTSALLPPSSALDMGTFKSYNCQIPRFSSGHGTIGMLAGTGGPIDI 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02897 707 Gene3D - 313 457 IPR012677 -
Spst2g02897 707 SUPERFAMILY CCCH zinc finger 235 257 IPR036855 GO:0046872
Spst2g02897 707 MobiDBLite consensus disorder prediction 79 131 - -
Spst2g02897 707 MobiDBLite consensus disorder prediction 528 582 - -
Spst2g02897 707 MobiDBLite consensus disorder prediction 525 582 - -
Spst2g02897 707 MobiDBLite consensus disorder prediction 61 131 - -
Spst2g02897 707 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 632 - -
Spst2g02897 707 CDD RRM_AtC3H46_like 368 437 IPR034365 -
Spst2g02897 707 Gene3D - 226 298 - -
Spst2g02897 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 378 422 IPR000504 GO:0003723
Spst2g02897 707 SMART rrm1_1 367 437 IPR000504 GO:0003723
Spst2g02897 707 SMART c3hfinal6 234 258 IPR000571 GO:0046872
Spst2g02897 707 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 373 444 - -
Spst2g02897 707 SUPERFAMILY RNA-binding domain, RBD 376 453 IPR035979 GO:0003676
Spst2g02897 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 442 IPR000504 GO:0003723
Spst2g02897 707 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Spst2g02897 707 ProSiteProfiles Zinc finger C3H1-type profile. 232 259 IPR000571 GO:0046872
Spst2g02897 707 MobiDBLite consensus disorder prediction 443 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02897 Spst-Chr2 28777976 28780881 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02897 - - gmx:100801341 1187.94