Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02890 ATGAGTGATTCTAAGATGCTACTATTTGGGTCATTTACTGAAGATGAAACCCGATCACTGCTGTCAAAGCAGCCTTCTGGGAAGAATGAAAAGTCTGTGCAGACGAATCAGCTGCGGTTTGGTTCTCTGAATTCTGTTACTGTTGAGTCAAACACACTGCAAAACTCATCAAAAGCAACAGTTGGTGCCCCACTTGCTGATTCTCAGAAATGCAATGGAGTAAAAAGTGTTAGTGACAATTCACCTAAAGTGTCAGGAAAAATTAAAGAGAATGGCAGCATTGCCAATTTCTCCCTTACCCCCACCGGTACCAGTAATGTCAATGAAGCAATAGAAAAAAATGCGAATTCTTTTACATTACTTGATGAAGCTGGTCCCTCAAACAAGTTTACTCATTTGAGCCTAGATGCTTCTGAGACTGAAAGATTGAAGAACGTAGATAAAACTGGCAATGGTGATGATTCTTCATTAAAGTTCTCTGATCGAGAGCCCCCAAAGGCACCTAATGGGCATGCTGTTCTGCCTGTTAAAGATATACTGCCTCGAGGCCTTATCAACTCTGGGAATCTTTGCTTTCTTAATGCAACCATGCAGGCCCTACTGTCATGCTCACCTTTTGTTCATCTTTTACAACAATTAAGAACACGCAACCTTCCTAAGGTTGAATATCCTACATTAACGGCATTTGCTGATTTCATAACCCAATTTGATATGCCAAGCACACCTTACATAAAGAAGCAAGATACGAATATATTTGAGTCTGGGAGGCCATTTTGCCCTGTTATGTTTGAAGGCGTTCTAAAAAATTTCACTCCAGATGTGCCAAATAGTATATCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGTTGAATTACTGAAGCTTGAAGGACAGTCTTCAAGTCTTAACGGTAGCAAATCTTCTCTTGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTGGGGCCAAAGAATAAATCTGCCGTAACAAGGACTCAAAGCCTTGCCCCATCAGAATTAAGTGGTATTTTTGGAGGACAACTTAGAAGTTTGGTGAGAGCTAAAGGAAATAGAGCCTCGGCCACTGTTCAACCATATCTCTTGCTCCATCTTGACATCCATCCCGACAACGTACACACTATTGAAGATGCACTTCGCCTGTTTTCTGCATCGGAAACTCTTGAAGGGTACCGAACATCACTCACTGCAAAGGTTGGTGTTGTGACTGCCAGAAAATCTGTACAAATAGTGACACTTCCTAAAATAATGATATTGCACCTGATGCGTTTTGGTTACGGAAGCCAGGGAAGCACTAAGCTGCATAAGCCTGTGCACTTTCCTCTTGAGTTGGTGTTGGGACGTGATTTGCTTGTTTCACCATCTACTGAAGGTCGAAAGTATGAACTTGTTGCTACAATTACTCACCACGGAAGGGAGCCTTCAAAGGGGCACTACACAGCCGATGCCCAATACCCTAATGGTCGTTGGCTACGATTTGATGATGCATCTGTCTTTGCTATTGGAACAAATAAGGTGCTGCATGATCAGGCATATGTCCTTTTCTACAGACAGCTGTGA 1608 0.4223 MSDSKMLLFGSFTEDETRSLLSKQPSGKNEKSVQTNQLRFGSLNSVTVESNTLQNSSKATVGAPLADSQKCNGVKSVSDNSPKVSGKIKENGSIANFSLTPTGTSNVNEAIEKNANSFTLLDEAGPSNKFTHLSLDASETERLKNVDKTGNGDDSSLKFSDREPPKAPNGHAVLPVKDILPRGLINSGNLCFLNATMQALLSCSPFVHLLQQLRTRNLPKVEYPTLTAFADFITQFDMPSTPYIKKQDTNIFESGRPFCPVMFEGVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHVELLKLEGQSSSLNGSKSSLVSSVEDDEWETVGPKNKSAVTRTQSLAPSELSGIFGGQLRSLVRAKGNRASATVQPYLLLHLDIHPDNVHTIEDALRLFSASETLEGYRTSLTAKVGVVTARKSVQIVTLPKIMILHLMRFGYGSQGSTKLHKPVHFPLELVLGRDLLVSPSTEGRKYELVATITHHGREPSKGHYTADAQYPNGRWLRFDDASVFAIGTNKVLHDQAYVLFYRQL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02890 535 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 63 534 - -
Spst2g02890 535 MobiDBLite consensus disorder prediction 323 342 - -
Spst2g02890 535 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 182 535 IPR028889 -
Spst2g02890 535 Pfam Ubiquitin carboxyl-terminal hydrolase 183 532 IPR001394 GO:0004843|GO:0016579
Spst2g02890 535 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 183 198 IPR018200 GO:0004843|GO:0006511
Spst2g02890 535 MobiDBLite consensus disorder prediction 141 165 - -
Spst2g02890 535 MobiDBLite consensus disorder prediction 141 170 - -
Spst2g02890 535 SUPERFAMILY Cysteine proteinases 176 533 IPR038765 -
Spst2g02890 535 FunFam Ubiquitin carboxyl-terminal hydrolase 173 534 - -
Spst2g02890 535 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 477 495 IPR018200 GO:0004843|GO:0006511
Spst2g02890 535 Gene3D Cysteine proteinases 173 534 - -
Spst2g02890 535 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02890 Spst-Chr2 28705547 28709573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02890 179 535 Miscellaneous Gene Families AT2G24640 28.767 8.46e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02890 K11841 - gmx:100799656 879.011