Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02889 ATGAATACCCTCCTTCCCGAAACCCAACTTTCCGCTCCAATGGATTCAAAATCAAAACTTTGGACAACACAAACTTCAACTTCTACCAGCTGTAGCAGTAGCAGCAGCAGCAGCAGCGAGAACGACGAGAGCCCCTTTTGTTCCCAACGCATACCCATCGTCGTTTCTGCCTTGTTCCATTCTCACCGATCACTCGCAGTTCTCTCGGGACACATGGGCTCCGTTTCATGCTTGGCCCTGTGCGGGGAGTTCATCCTGAGTGCCTCTCAGGGTAAGGATATCATAGTCTGGCAGCAACCGGATTTGAGGCTGTTTGCAAAGTTCGGACAAGGAGAAGGATCAGTGAAAGCACTTGCAACGGTTGGCAACAAGGTTTTCACCGCACATCAAGATAGCAGGATCAGAGTTTGGAAGGTGTCGAGAAGCTCAGAGAACGTGTTCAAGCTTGTTGATTCTCTTCCCACAACCAAGGACTATTTGGGGAAGTTCATGAAGCAGAGCAACTATGTCCAAACTCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCAGATAGCATTTCTTGCTTGACGGTTTATAATGGGTTGATTTATTCTGGGTCGTGGGATAAGACTCTTAAGGTGTGGAGGCTCTCGGATTTAAAGTGTTTGGAGTCAGTTAAGGCTCATGATGATGCAATCAATGGATTGGTGGCATGTAAAGGGGTTGTGTATTCTGCTTCTGCTGATGGAAAGATTAAGGCTTGGGGGAGAAAAGATGTGAAGGGGGAGCATTGTTTGAAGGGGGTTTTGGAGGGTCATAAGGATGTTTCTTTTAATGCTATTGTTGTTTCTGAGGATGGGAAGTGGGTTTATGGAGGAGGTTCTGATGGGTTTGTGATGGGGTGGGAGGGGAGTGGGAGTGGGGGTTTAGAGAGTTGGAAGCTGGTCTCTGAGACCAAAGCACATGAGATGGCTGTGTTGTGTATGTGTCTAATGGGGGAGTTTTTGTGCAGTGGATCAGCGGATAAAAGTATAGGGATTTGGAGGAGAGAGGCTTTTGGTAAGCTTTGTAGAGTTGGAGTCATAAGTGGCCATGAAGGGCCTGTGAAGTGTTTGCAAGCCTCATCTAACAGGATTGGTGGTGGATTTTTATTGTACAGTGGAAGCCTTGACAAAAGTGTGAGAGTTTGGTGGGTTCCAAAGTATAATGATGCAGAAGTAGAGGATAACAACTCTACAAAATTTGGCACAATGAATAAATCCATCCCCCCATGCTAG 1260 0.4683 MNTLLPETQLSAPMDSKSKLWTTQTSTSTSCSSSSSSSSENDESPFCSQRIPIVVSALFHSHRSLAVLSGHMGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGEGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDSLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGLIYSGSWDKTLKVWRLSDLKCLESVKAHDDAINGLVACKGVVYSASADGKIKAWGRKDVKGEHCLKGVLEGHKDVSFNAIVVSEDGKWVYGGGSDGFVMGWEGSGSGGLESWKLVSETKAHEMAVLCMCLMGEFLCSGSADKSIGIWRREAFGKLCRVGVISGHEGPVKCLQASSNRIGGGFLLYSGSLDKSVRVWWVPKYNDAEVEDNNSTKFGTMNKSIPPC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02889 419 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Spst2g02889 419 Pfam WD domain, G-beta repeat 353 391 IPR001680 GO:0005515
Spst2g02889 419 Pfam WD domain, G-beta repeat 182 209 IPR001680 GO:0005515
Spst2g02889 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 391 IPR001680 GO:0005515
Spst2g02889 419 SMART WD40_4 213 250 IPR001680 GO:0005515
Spst2g02889 419 SMART WD40_4 173 210 IPR001680 GO:0005515
Spst2g02889 419 SMART WD40_4 61 98 IPR001680 GO:0005515
Spst2g02889 419 SMART WD40_4 306 343 IPR001680 GO:0005515
Spst2g02889 419 SMART WD40_4 349 392 IPR001680 GO:0005515
Spst2g02889 419 SMART WD40_4 101 138 IPR001680 GO:0005515
Spst2g02889 419 SMART WD40_4 257 297 IPR001680 GO:0005515
Spst2g02889 419 CDD WD40 64 391 - -
Spst2g02889 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 391 - -
Spst2g02889 419 Gene3D - 164 415 IPR015943 GO:0005515
Spst2g02889 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 219 IPR001680 GO:0005515
Spst2g02889 419 Gene3D - 7 158 IPR015943 GO:0005515
Spst2g02889 419 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Spst2g02889 419 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Spst2g02889 419 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Spst2g02889 419 MobiDBLite consensus disorder prediction 14 45 - -
Spst2g02889 419 FunFam BnaA09g28200D protein 170 254 - -
Spst2g02889 419 SUPERFAMILY WD40 repeat-like 63 395 IPR036322 GO:0005515
Spst2g02889 419 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 25 395 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02889 Spst-Chr2 28701812 28703071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02889 170 391 Miscellaneous Gene Families AT5G08390 24.561 1.18e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02889 - - gmx:100775295 701.049