Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02875 ATGGCTAGTGCTGCAGTTATTGGACTCAGTGGAGGAAAGAGATTGTTGAGTTCATCTTACCATTACTCTGATATTATAGAAAAGCTTTCTTATGGGAGTGACTTTGGATCTGCACACTATCAGATTGTTTCTGCGAAATCTGTAATAGTTGCCAAGAAATCATCCAACTACACTCCAACTTTTCCAGTATCGAACCGACAGAATCAGTCCATTAAGGTTCTTAAGGAGCATGTTGATGCTGCTGCTACCACTGAGGATACATGGTTTCAGAATTACAATTCCAATGACTTAGAAGTGGAAAGCTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTACTGCAGAAGTCAATGCTGGAAAAGCAATGGAGCCTTTCCTTCGAAAGGGAGGTGCTAACTGAACATTCGAGTAAAGCAAAAAACCGTAGGAAAGTGGCAGCAGTGACCTCTTCTGGGGTGTCTGCAAGGCAAAGAAGAATGAATAACAAGCGGAAGACCACGGTTAAGACGTGTGGGGCTATACAACTGAAGTCCAAAATCAGTCCAGAGGTTCTTCAAAACCGTTTGAAGGGCTATGTTAAAGGTGTGGTGGGTGAGGAATTGCTCTCTCATGCAGAAGTTGTAAGCCTATCAGAGAAAATAAAAGTTGGGCTTTCCTTAGAGGAGCATAAATCCAGACTGAAGGAGAGGCTAGGATGTGAACCCTCTGAAGATCAAATGGCAACCTCATTGAAGATTTCTCGTACCGAACTACGGGAAAAAATGCTAGAGTGCTCATTGGCTAGAGAAAAGTTGGCTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAAAGATATGATAACCTTGGTGCAGAAATGGGTGACCTGGTTCAGGGCGGCTTGATTGGACTACTTCGTGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAAGATTTCAACTTATGTTTACTGGTGGATACGTCAGGGTGTTTCAAGAGTCTTAATTGAGAATTCAAGAACATTAAGATTGCCTGCTCATTTGCATGAGAGATTATCTTTAATCCGCAATGCAAAATTTAGACTAGAAGAGAGAGGCATTACTCCAACCATTGATAGGATTGCAAAACACCTTAACATGTCTCAAAAGAAAGTCAGAAATGCTACTGAGGCTATCAGCAAAACTATCTCGCTTGATAGAGAAGCATTCCCCTCTCTGAATGGTCTACGAGGAGAAACTCATCATAGTTATATTGCAGATAATCGCATTGAGAACATTCCATGGAAGGGAGTAGATGAGTGGGCACTAAAGGATGAAGTGAACAAACTCATGAATGTGACCCTTAAGGAACGAGAAAGAGAAATTATTCGACTTTATTATGGACTAGATAAAGAGTGTCTTACATGGGAAGACATTAGTAAACGGATGGGTTTATCAAGAGAAAGAGTGAGGCAAGTTGGACTTGTTGCAGTGGAGAAACTAAAACATGTTGCAAGGAAGAGAGAATTGGAGGCTATGCTATTGAATCATTAA 1515 0.4086 MASAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSAHYQIVSAKSVIVAKKSSNYTPTFPVSNRQNQSIKVLKEHVDAAATTEDTWFQNYNSNDLEVESSEMGYSVEALLLLQKSMLEKQWSLSFEREVLTEHSSKAKNRRKVAAVTSSGVSARQRRMNNKRKTTVKTCGAIQLKSKISPEVLQNRLKGYVKGVVGEELLSHAEVVSLSEKIKVGLSLEEHKSRLKERLGCEPSEDQMATSLKISRTELREKMLECSLAREKLAMSNVRLVMSIAQRYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRVLIENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIDRIAKHLNMSQKKVRNATEAISKTISLDREAFPSLNGLRGETHHSYIADNRIENIPWKGVDEWALKDEVNKLMNVTLKEREREIIRLYYGLDKECLTWEDISKRMGLSRERVRQVGLVAVEKLKHVARKRELEAMLLNH 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02875 504 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 115 502 - -
Spst2g02875 504 Gene3D RNA Polymerase Primary Sigma Factor 50 335 - -
Spst2g02875 504 ProSitePatterns Sigma-70 factors family signature 1. 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 337 393 IPR013324 -
Spst2g02875 504 Gene3D - 420 499 IPR036388 -
Spst2g02875 504 NCBIfam sigma-70 family RNA polymerase sigma factor 261 490 IPR014284 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 PRINTS Major sigma-70 factor signature 477 488 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 PRINTS Major sigma-70 factor signature 289 302 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 PRINTS Major sigma-70 factor signature 313 321 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 PRINTS Major sigma-70 factor signature 462 477 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 PRINTS Major sigma-70 factor signature 442 454 IPR000943 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 421 495 IPR013324 -
Spst2g02875 504 Pfam Sigma-70 region 2 267 327 IPR007627 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 188 335 IPR013325 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 Pfam Sigma-70 region 3 344 414 IPR007624 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 Gene3D - 336 386 IPR036388 -
Spst2g02875 504 MobiDBLite consensus disorder prediction 147 166 - -
Spst2g02875 504 Pfam Sigma-70, region 4 441 490 IPR007630 GO:0003700|GO:0006352|GO:0006355
Spst2g02875 504 CDD Sigma70_r4 431 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02875 Spst-Chr2 28580725 28584308 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02875 K03086 - gmx:100801884 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g02875 2 28580725 28584308 Spst2g02875 2 28580725 28584308 ECH