Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02863 ATGGGAGTTACTGGACTTGAAATTCATGGGAATTCTGCTTCGGTTTTGCATTTTGGTGCCAACTCGTTATCTTCTTATACGGTTCCTATTTCTTTGAGACCCTTTTTTGGGAATGCTTTGAATGCGAGGTTTACGGGGAAGATTCGAGTTTCCCACACTCGGAAGCTGAACTTCGGAGCAGTTACTGCTTCACTGAATGCTGGGTTGATTAGTGATGCGCTTCTTCCGAAAGACTCAGAATTTAAGCCTTCCTTTGACGAATATTTGAAGGCTATGGAATCTGCCAGAACTGCGAGAGGCAATAAGCGCACTGCCACTCCTAGAAAACAGAAGACGACGGAAAAGGGTGATAACACTACAAAATTTAACAGCGCAAGAGTGAAAATTGAGAGAAAAGATGGGCTTGAAGGTGTCAAGGAAGGTTCCGCCAGAAGTAGCGGTAAGGTCAGAAGAACACCCAGTAAAGGATCTAGAGGTGAAAATGATGGGAAAGAAAACAACCTTGATGTAAAGGCAAAGCAGAAAAATGGGTCATTGAAAAACCAGAGTTATAGTTTAGAATCAGAATCTGATGATTACAGTGAGATTAACAAAAGTGGAAGGATGAGCAAGAACATAGTTAGGTCTAGTTTGAATGGTAACCGTGGGAGTGTCATAAAGAGGGGAGTTACTCATGATTTATATTCTTCAAAGATGTTGGGAGAGAAGGTTGTTGGTAGCAGACAAAGGGATTACAACACACAGAGTAGAACCACTGATGGAGATAAAATTGTAGTTACACAAAAAGTTGAGGATAGAGGGCTTATAAGAAGACACACTGAGAATGGAAGTTTGATAAATAGAAATGGTCTGTTAAATGTCAATTTGAATGGAAGCCGCAAGCGTTTCATTGACAGGGGCTATGATTCTGACAGTCTGGAGGTGGACCGAGTGGCATTTGAGAATCTGGAGGACCCAAACAGTGTTATCATAAAGTCACAATTTTCACACAAGGATATGGAGGAGAAAATCCAGAGGCTAGCCAATTCGTTAAATGGTGCAGATATCAATTTGCCTGAATGGATATTTTCTAAGATGATCAGAAGTGCTAGGCTTAAATTTTGTGACTATTCCATAACAAGGATTATCATAATCTTGGGAAAACTAGGAAACTGGAGGCGAGTGATACAGGTGATTGAATGGCTTCAAAAGCGTGAACGTTACAGGCATATATATACTGCTGCTCTTAATGCACTTGGAAAGTCGAGGAGACCTGTAGAGGCACTAAATATGTTTCATGCAATGCAGCAACAGATGTCCTCGTATCCTGATTTAGTAGCTTATCGTAGTATTGCTGTGACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATACAATGCGATCACCACCTAAGAAAAAGTTCAAAACAGGGGTATTTAAGAACTGGGACCCAAGGCTGGAACCAGATATTGTAGTCTATCATGCAGTCCTTAATGCTTGTGTTAGGCAGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAACAAGGACAACAACCTTCGGCCACAACTTACGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTATAACTTGGTTCATGAGTTTTTCAGAAAACTTCAGAAGTCTTACATTCCAAATTCATTGACATATAGAGTTCTTGTAAATACACTTTGGAAAGAGGGAAAAACTGAGGAAGCTATATTGGCTGTCCAAGAAATGGAAAATCGTGGAATTGTGGGCTCTGCTTCTTTATATTATGATCTAGCTCGATGCCTCTGTGTGGCTGGAAGAAGTCATGAGGCACTAAAGCAGATGGACAAGATATGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATTCAAGCAAGTCTAGACTCTGGAAATATTCAGGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTGCTCCAAATCTGGTTACTTGTAACATAATGCTGAAAGCTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGTTGTTTGAGCAGATGGCAGAGAATGCAAGTCGTCTAAGGGAAAATAATGATTACAAGATGCTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGCAGAGATGGGATTATTTTGATCATGTCTATCATAGGATGTTGAACCATGGTTACCACTTCAATCCAAAACGGCATCTTCAAATGATATTGGAGGCTTCAAGAGCGGGAAAGGAACGGCCTTTGGAGATAACATGGAAACACTTAACCGACATGGATCGAATTCCACCTACTTCTCTGACTAAGGAGAGGTTCTTTGCTAAGCTAGCGAAGGATGACTACATTGCTGCTCTCACATGTATGACCAACAATCTCCCAAAAGACTTGCAGCCATTTTCCAAATCGTCTTGGTTGAAACTATTAAAAAATAATTCTCACCGGTTTCAGAAGGATACTATTGTTGGACTAACGAACGAGGCCAGCAAAATAGTTTCCAATAGTAGTTTACCGAATCCAACACTTGAGTATTTAATACAATCATGCAAAAAAATTCTTTTTGCCACTGACATCAGTGAAGCTGACATGGATTCAGTGAAAAATGTACTTGAAGTAGAGAGTAAGCTGGTAGTAGCCAACTCTAGATGA 2685 0.4056 MGVTGLEIHGNSASVLHFGANSLSSYTVPISLRPFFGNALNARFTGKIRVSHTRKLNFGAVTASLNAGLISDALLPKDSEFKPSFDEYLKAMESARTARGNKRTATPRKQKTTEKGDNTTKFNSARVKIERKDGLEGVKEGSARSSGKVRRTPSKGSRGENDGKENNLDVKAKQKNGSLKNQSYSLESESDDYSEINKSGRMSKNIVRSSLNGNRGSVIKRGVTHDLYSSKMLGEKVVGSRQRDYNTQSRTTDGDKIVVTQKVEDRGLIRRHTENGSLINRNGLLNVNLNGSRKRFIDRGYDSDSLEVDRVAFENLEDPNSVIIKSQFSHKDMEEKIQRLANSLNGADINLPEWIFSKMIRSARLKFCDYSITRIIIILGKLGNWRRVIQVIEWLQKRERYRHIYTAALNALGKSRRPVEALNMFHAMQQQMSSYPDLVAYRSIAVTLGQAGHMKELFDVIDTMRSPPKKKFKTGVFKNWDPRLEPDIVVYHAVLNACVRQKQWEGAFWVLQQLKKQGQQPSATTYGLVMEVMFSCGKYNLVHEFFRKLQKSYIPNSLTYRVLVNTLWKEGKTEEAILAVQEMENRGIVGSASLYYDLARCLCVAGRSHEALKQMDKICKVANKPLVVTYTGLIQASLDSGNIQDGAYIFEKMKEVCAPNLVTCNIMLKAYLEHGMFQEAKALFEQMAENASRLRENNDYKMLVVPDTYTFNTMLDACVSEQRWDYFDHVYHRMLNHGYHFNPKRHLQMILEASRAGKERPLEITWKHLTDMDRIPPTSLTKERFFAKLAKDDYIAALTCMTNNLPKDLQPFSKSSWLKLLKNNSHRFQKDTIVGLTNEASKIVSNSSLPNPTLEYLIQSCKKILFATDISEADMDSVKNVLEVESKLVVANSR 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02863 894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Spst2g02863 894 MobiDBLite consensus disorder prediction 95 196 - -
Spst2g02863 894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 660 694 IPR002885 -
Spst2g02863 894 Pfam Pentatricopeptide repeat domain 625 671 IPR002885 -
Spst2g02863 894 Pfam Pentatricopeptide repeat domain 484 532 IPR002885 -
Spst2g02863 894 Coils Coil 330 350 - -
Spst2g02863 894 MobiDBLite consensus disorder prediction 153 171 - -
Spst2g02863 894 SUPERFAMILY TPR-like 472 689 IPR011990 GO:0005515
Spst2g02863 894 Coils Coil 677 697 - -
Spst2g02863 894 FunFam Pentatricopeptide repeat-containing protein 335 476 - -
Spst2g02863 894 NCBIfam pentatricopeptide repeat 404 437 IPR002885 -
Spst2g02863 894 NCBIfam pentatricopeptide repeat 709 740 IPR002885 -
Spst2g02863 894 NCBIfam pentatricopeptide repeat 489 522 IPR002885 -
Spst2g02863 894 NCBIfam pentatricopeptide repeat 662 689 IPR002885 -
Spst2g02863 894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
Spst2g02863 894 MobiDBLite consensus disorder prediction 172 190 - -
Spst2g02863 894 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Spst2g02863 894 Pfam PPR repeat 404 430 IPR002885 -
Spst2g02863 894 Pfam PPR repeat 709 738 IPR002885 -
Spst2g02863 894 Pfam PPR repeat 559 588 IPR002885 -
Spst2g02863 894 Gene3D Tetratricopeptide repeat domain 609 770 IPR011990 GO:0005515
Spst2g02863 894 Gene3D Tetratricopeptide repeat domain 333 477 IPR011990 GO:0005515
Spst2g02863 894 Gene3D Tetratricopeptide repeat domain 478 577 IPR011990 GO:0005515
Spst2g02863 894 MobiDBLite consensus disorder prediction 124 146 - -
Spst2g02863 894 PANTHER OS01G0674700 PROTEIN 60 874 IPR044645 GO:0009658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g02863 Spst-Chr2 28439304 28446721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02863 507 757 Glycosyltransferase AT1G05670 20.472 6.83e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02863 - - gmx:100787028 1346.64