Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst2g02826 | ATGGCTGACAATCGGAAACCGCCGAAGCTTCCCGTTGAAGGAAAGCGCAACATCCTAATCACTAGCGCTTTGCCTTACGTCAACAACGTGCCTCACCTCGGCAACATCATTGGATGCGTGTTAAGTGCCGATGTGTTTGCTCGCTATTGTCGGATTCGGGGTTATAACACTATTTACATGTGCGGTACGGATGAGTATGGAACCGCGACAGAGACTAAAGCCATGGAAGAAAACTGCTCTCCGAAGGAGATTTGTGACAAATACTATGCTATACATAAGGAGGTGTATAATTGGTTCAACATAAGTTTTGACGAATTTGGGCGGACATCCTGCCCTCAGCAAACTGAAGTTTGCCAAGAAATTTTTAAAAAGATATTTGACAACAAGTGGCTCTCGGAAAACACAATGCAGCAGCTTTATTGCGACACTTGTGAAAGGTTTTTAGCTGATAGGCTTGTGGAGGGAAACTGCCCAACTCCAGGGTGTGAGTATGATTCTGCTCGAGGAGACCAGTGTGAGAAGTGTGGAAAACTTCTAAATCCAACGGAATTAAAAAATCCCAGATGCAAGGTTTGTCAGAAAACTCCTCGGATTCGGGATACAGACCATTTGTTTCTCGAACTCCCTTTATTGAAGGATAAATTGGAAAAATACATCAGTGAGATGTCTGTGGTTGGTGGATGGAGTCAGAATGCCATCCAAACAACAAATTCATGGCTTAGAGAAGGACTAAAGCCACGCTGTATTACAAGGGATCTAAAGTGGGGGGTTCCCGTTCCACATGAAAAATACAAAGACAAGGTTTTCTATGTATGGTTTGATGCACCAATTGGATATGTCTCAATCACTTCATGCTACACTCGTGATTGGGAGAAATGGTGGAAAAACCCAGAGAATGTTGAGCTGTATCAGTTTATGGGCAAGGACAATGTACCATTCCACACTGTGATGTTTCCATCTACTCTACTTGGAACTGGTGAAAATTGGACTTTAATGAAGACTATTAGTGTTACCGAATACTTGAATTATGAATCTGGGAAGTTTTCCAAGAGCAAGGGTATCGGGGTATTTGGTAATGATGTAAAAGATACTAATATTCCAGTTGAAGTATGGAGATATTACTTGCTGACAAATAGGCCTGAGGTATCGGATACATTATTTACATGGCCTGATTTGCAAGCTAAACTAAATAGTGAATTATTGAATAATTTGGGCAACTTCATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCATTATCCCCTCCATTCCTGATGATGTAAGTGGTGACTCCCATGATCTAACGAAAAAATTAGCTGATAAAGTTGCTGCATATATAGACCAATACATAGAAGCGATGGAGAAGGTTAAACTAAAGCAAGGATTGAGAACCGCAATGAGCATATCTAGCGAGGGAAATGCTTATCTCCAGGAAGCTCAATTCTGGAAACTTTACAAGGAAAACAAATCTCACTGCTCCATTGTCATGAAAACTGCAGTGGGGATTGTATATCTTCTTGCTTGTTTATTAGAACCTTTTATCCCATCTTTCACCCACGAAGTATTTAATCAGTTAAATTTGCCTGCGGAGATACATGTCTCACTTTGTGACGATAAAGGAGATGTTGATAGGGTAAAAATACCTTGGGATATCATAAGTTCTGGTCATAAGATTGGAACACCCAAGCCATTGTTCAAGGAGCTGAAAGATGAAGAAGTGGAGTTCTACAGGAATAAGTTCGCAGGAAGTCAAGCTGATAGGATTGTGCGAGCAGAGGTGGAAGCTGAAAATGTTGCTGAGCAACTGAAGAAAACAAAAGTTTCAGGTGTTTTATCCCGCTCTTCTATTTCTAATGAGTGTTCAAGGTTAAGAAGAAGGAAATCAAAGTCAGAAGATGAGGGGCATGTGGAGTCTTTGATGAAGATGCAGATGCCGGATCTAAGTATATTGGAGCATTGCACATTGGAAAGTAGGGATTTTGTCTATGGCAATGGAAAGAAAAAATCAGCAAAATCATCAAACGAAGCCAAAAACAAAGCTGCCACTGAACCAGATATTACCATCACAAGGCTTGATATCAGGGTTGGCCTGATAACAAAAGCTCAAAAACATCCTGATGCAGATGCGCTATATGTTGAAGAGATTGACGTTGGTGAAGAACAGACCAGAACTGTTGTCAGTGGGCTTGTCAAATATATACCACTTGATGAAATGCAGAACCGAAAGGTCTGTGTTCTTTGTAACCTAAAGCCACAATCCATGAGAGGCATTAAATCCCAAGCGATGGTTCTTGCTGCTTCCAATGATGATCATTCCAAGGTTGAGTTGGTTGAGCCTCCCAGTTCTGCTACTGTTGGAGAAAGAGTTACATTCCCAGGGTATGAAGGTAATCCGGATGAACTCTTGAACCCAAAGAAGAAAGTTTGGGAAACATTGCAAGTCGATCTTCATAGTAACGAGGATCTGGTAGCATGCTACAAAGATGTTCCCCTCACCACATCAGCTGGCGTTTGCAAGGTTTCATCCATACGCTGTGGATCCATTAAGTAG | 2571 | 0.4138 | MADNRKPPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRIRGYNTIYMCGTDEYGTATETKAMEENCSPKEICDKYYAIHKEVYNWFNISFDEFGRTSCPQQTEVCQEIFKKIFDNKWLSENTMQQLYCDTCERFLADRLVEGNCPTPGCEYDSARGDQCEKCGKLLNPTELKNPRCKVCQKTPRIRDTDHLFLELPLLKDKLEKYISEMSVVGGWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTRDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDVKDTNIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSIIPSIPDDVSGDSHDLTKKLADKVAAYIDQYIEAMEKVKLKQGLRTAMSISSEGNAYLQEAQFWKLYKENKSHCSIVMKTAVGIVYLLACLLEPFIPSFTHEVFNQLNLPAEIHVSLCDDKGDVDRVKIPWDIISSGHKIGTPKPLFKELKDEEVEFYRNKFAGSQADRIVRAEVEAENVAEQLKKTKVSGVLSRSSISNECSRLRRRKSKSEDEGHVESLMKMQMPDLSILEHCTLESRDFVYGNGKKKSAKSSNEAKNKAATEPDITITRLDIRVGLITKAQKHPDADALYVEEIDVGEEQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPQSMRGIKSQAMVLAASNDDHSKVELVEPPSSATVGERVTFPGYEGNPDELLNPKKKVWETLQVDLHSNEDLVACYKDVPLTTSAGVCKVSSIRCGSIK | 856 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst2g02826 | 856 | Pfam | tRNA synthetases class I (M) | 18 | 412 | IPR015413 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Spst2g02826 | 856 | CDD | MetRS_core | 17 | 387 | IPR033911 | GO:0004825|GO:0006431 | |
| Spst2g02826 | 856 | PRINTS | Methionyl-tRNA synthetase signature | 399 | 410 | IPR033911 | GO:0004825|GO:0006431 | |
| Spst2g02826 | 856 | PRINTS | Methionyl-tRNA synthetase signature | 20 | 33 | IPR033911 | GO:0004825|GO:0006431 | |
| Spst2g02826 | 856 | PRINTS | Methionyl-tRNA synthetase signature | 269 | 280 | IPR033911 | GO:0004825|GO:0006431 | |
| Spst2g02826 | 856 | PRINTS | Methionyl-tRNA synthetase signature | 304 | 319 | IPR033911 | GO:0004825|GO:0006431 | |
| Spst2g02826 | 856 | PRINTS | Methionyl-tRNA synthetase signature | 53 | 67 | IPR033911 | GO:0004825|GO:0006431 | |
| Spst2g02826 | 856 | PRINTS | Methionyl-tRNA synthetase signature | 101 | 112 | IPR033911 | GO:0004825|GO:0006431 | |
| Spst2g02826 | 856 | PANTHER | METHIONINE--TRNA LIGASE | 4 | 854 | IPR023458 | GO:0004825 | |
| Spst2g02826 | 856 | CDD | Anticodon_Ia_Met | 396 | 532 | IPR041872 | - | |
| Spst2g02826 | 856 | Gene3D | HUPs | 17 | 400 | IPR014729 | - | |
| Spst2g02826 | 856 | Gene3D | - | 401 | 574 | - | - | |
| Spst2g02826 | 856 | Pfam | Anticodon binding domain of methionyl tRNA ligase | 437 | 591 | IPR041872 | - | |
| Spst2g02826 | 856 | Gene3D | - | 693 | 856 | IPR012340 | - | |
| Spst2g02826 | 856 | Gene3D | - | 153 | 189 | IPR029038 | - | |
| Spst2g02826 | 856 | SUPERFAMILY | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 404 | 587 | IPR009080 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Spst2g02826 | 856 | Hamap | Methionine--tRNA ligase [metG]. | 16 | 586 | IPR023458 | GO:0004825 | |
| Spst2g02826 | 856 | SUPERFAMILY | Methionyl-tRNA synthetase (MetRS), Zn-domain | 153 | 189 | IPR029038 | - | |
| Spst2g02826 | 856 | CDD | tRNA_bind_EMAP-II_like | 693 | 797 | - | - | |
| Spst2g02826 | 856 | FunFam | tyrosine--tRNA ligase, cytoplasmic isoform X2 | 693 | 856 | - | - | |
| Spst2g02826 | 856 | Pfam | Putative tRNA binding domain | 700 | 794 | IPR002547 | GO:0000049 | |
| Spst2g02826 | 856 | ProSiteProfiles | tRNA-binding domain profile. | 694 | 797 | IPR002547 | GO:0000049 | |
| Spst2g02826 | 856 | NCBIfam | methionine--tRNA ligase | 18 | 538 | IPR014758 | GO:0000166|GO:0004825|GO:0005524|GO:0006431 | |
| Spst2g02826 | 856 | SUPERFAMILY | Nucleotidylyl transferase | 15 | 399 | - | - | |
| Spst2g02826 | 856 | FunFam | Methionine--tRNA ligase | 153 | 189 | - | - | |
| Spst2g02826 | 856 | ProSitePatterns | Aminoacyl-transfer RNA synthetases class-I signature. | 25 | 36 | IPR001412 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Spst2g02826 | 856 | SUPERFAMILY | Nucleic acid-binding proteins | 696 | 840 | IPR012340 | - | |
| Spst2g02826 | 856 | FunFam | Methionine--tRNA ligase cytoplasmic | 401 | 574 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst2g02826 | Spst-Chr2 | 28155536 | 28163538 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst2g02826 | K01874 | - | gmx:100809861 | 1477.23 |