Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g02726 ATGAAGCTCCGACTTGTTCGCGCGGCGCTGCCCGCCCCAGCCTCTACCATCCCTTCTTCTCTCTACAGACAGTTCTCCGCGTCCAAATTAGACGAGGAAAACGATGGTCATTTTGTGTCACTCCTTTGCGACATCGTTCGAGGAAAGCAGAGTTGGAAGGTGGCTTTCGACGATCCTTCAATTTCTTCGGCATTGAGGCCCCATCACGTGGAACAAGTCTTGATCAACACCTTGGACGATTCCAAGTTAGCTTTGAGGTTCTTCAACTTTCTGGGTCTGCACAAAAACATGAACCACTCCACAGCCTCCTTCGCCATCTTGGTCCACGCGCTTGTTCACTCCAGACTCTTCTGGCCCGCTAATTCCCTCTTGCAGACCCTTCTCCTTCGTGGATCCCCCCCAAAATACGTTTTTTCACATTTTCTACACTGTCACAAGCGATGTAAGTTTTCGTCCACTTCGGGTTTCGATTTACTGGTTCAGAGTTTCGTGCTAAGTTCACGAGTTTCTGATGCGGTGGTCGTTGTGAAACTCATGTTCGCCAATTCTTTGTTGCCTGAGGCTAGAACATTGAGTTCCCTCTTGAATGGGCTTTTGAGAGTTAGAAAATTTATAACGGTTTGGGAATTGTTTGATCAGTCTGTGAATGCGGGTGTTCGACCTGACCCTTATATTTGCTCCGCTGTGGTTCGTAGTCTCTGTGAATTGAAAGATTTTTTTAGAGCTAGGGAGAAGATTATGTGGATGGAATCTAATAGGTTTGATTTGAGTATTGTAACTTACAATGTCTTGATTCATGGGCTGTGCAAGGGTGATAGAGTTTTGGAAGCAGTTGAGATTAAAAGATCGTTGGGGGTAAAGGGCTTGAAAGCTGATGTTGTTACATACTGTACATTAGTGCTTGGCCTTTGTAGGGTGCAACAATTTGAGGTTGCAATTCAGCTTATGGATGAAATGATTGAATTGGGGCTTGCTCCATCCGATGCTGCTGTGTCGGGGTTAGTAGATGGATTGAGAAAGCAGGGAAAGATTGATGAGGCTTATGAGTTGGTAATTAAGATAGGAAGGTTTGGTTTTGTGCCTAATTTATTTGTTTATAATGCATTGATCAATTCTTTGTGCAAAGGGGGAGATTTGGATAAAGCAGAGATGCTTTATAATAATATGAGTTTGATGAACTTGCGTCCCAATGATATTACTTATTCCATTCTTATTGATTCCTTCTGCAGAAGGGGGAGGTTGGATTTTGCGATATCTTATTTTGATAGAATGATAGAAGATGGTATAAGAGAAACTGTATATGCCTATAACTCTTTGATAAATGGCCAATGCAAGTTTGGAGATTTGAGTGCCGCCAAGTCTCTGTTTACTGAGATGATCAATAAAGGGGTGGAGCCAACTGCTACAACTTATACATCATTGATTAATGGTTATTGCAAAAGCCTGCAACTACCGAAAGCATTCGAGCTATATAATGAGATGATTGAGAAAGGGGTTACTCCAAACATTTATACTTTCACTGCACTTATTTCTGGGCTTTGCAGCACAAATAAGATGGCCGAAGCATCCAAATTTTTTGATGATTTGGTTGAAAGGAAAATCAAGCCAACTGAGGTGACATATAATGTTTTGATTGAAGGACATTGTAGGGATAGCAACATTGATAAAGCCTTTGAATTGCTTGAAGACATGCTTCAAAAGGGCCTTGTTCCTGACACATATACCTATAGACCTCTTATCACTGGCCTTTGCTCTACTGGTAGGGTTTCTAAAGCTAAAGATTTTATTGATGGTCTCCACAAGCAGAAAGTAAAGTTAAATGAAATGTGCTATAGTGCACTTCTACATGGTTATTGCCAGGAAGGAAGATTGATGGAAGCACTGAGTGCTTCTTGTGAAATGGTTCAAAGAGGAATCAACATGGATTTGGTTTGCCATGCTGTTCTTATCGATGGTGCCCTAAAGCAGCCAGACAGGAAAACATTTTTTGGTCTCATAAAAGATATGCATGATCAAGGATTGAGACCTGATAATGTAATATATACAAGTATGATAGATGCATACAGCAAAGAAGGATCTTTCAAGAAAGCTTTTGCATGCTGGGATTTGATGGTTACTGAGGAATGCTTTCCTAATGTTGTGACTTATACTGCTTTGATGAATGGTTTATGCAAAGCAGGAGAAATAGACAGAGCAGGTATTCTTTTTAAAAATATGCAGGCTGTAAATCTCCCTCCCAATTCAATCACGTATGGCTGTTTTCTTGACAATCTTACTAAGGAGGGAAATATGAAGGAAGCTATAGGGCTTCACCATGCAATGCTTAAAGGACTTTTAGCTAACACTGTAACATATAACATTATCATCCGTGGCTTCTGCAGACTGGGTAGATTTCATGAAGCCACCAATGTTCTTTCTGAAATGACTGAAAATGGTATTTTCCCTGACTGTGTTACGTATTCAACATTAATTTATGAGTATTGCAGAAGTGGCAATGTACGGGCAGCTGTTACATTATGGGATATCATGTTAAAGAAAGGTCTCAAACCAGATTTGGTTGCATATAATTTGCTAATATATGGCTGTTGTGTTAACGGAGAGCTCAATAAGGCATTTGAAGTGCGTGATGATATGTTGAGGAGAGGGCTGAAGCCAAGACAAAATTTTCGAGAATTGGAGAAGGGTGAATATAAGAGCACCAGTTAA 2706 0.4069 MKLRLVRAALPAPASTIPSSLYRQFSASKLDEENDGHFVSLLCDIVRGKQSWKVAFDDPSISSALRPHHVEQVLINTLDDSKLALRFFNFLGLHKNMNHSTASFAILVHALVHSRLFWPANSLLQTLLLRGSPPKYVFSHFLHCHKRCKFSSTSGFDLLVQSFVLSSRVSDAVVVVKLMFANSLLPEARTLSSLLNGLLRVRKFITVWELFDQSVNAGVRPDPYICSAVVRSLCELKDFFRAREKIMWMESNRFDLSIVTYNVLIHGLCKGDRVLEAVEIKRSLGVKGLKADVVTYCTLVLGLCRVQQFEVAIQLMDEMIELGLAPSDAAVSGLVDGLRKQGKIDEAYELVIKIGRFGFVPNLFVYNALINSLCKGGDLDKAEMLYNNMSLMNLRPNDITYSILIDSFCRRGRLDFAISYFDRMIEDGIRETVYAYNSLINGQCKFGDLSAAKSLFTEMINKGVEPTATTYTSLINGYCKSLQLPKAFELYNEMIEKGVTPNIYTFTALISGLCSTNKMAEASKFFDDLVERKIKPTEVTYNVLIEGHCRDSNIDKAFELLEDMLQKGLVPDTYTYRPLITGLCSTGRVSKAKDFIDGLHKQKVKLNEMCYSALLHGYCQEGRLMEALSASCEMVQRGINMDLVCHAVLIDGALKQPDRKTFFGLIKDMHDQGLRPDNVIYTSMIDAYSKEGSFKKAFACWDLMVTEECFPNVVTYTALMNGLCKAGEIDRAGILFKNMQAVNLPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTYNIIIRGFCRLGRFHEATNVLSEMTENGIFPDCVTYSTLIYEYCRSGNVRAAVTLWDIMLKKGLKPDLVAYNLLIYGCCVNGELNKAFEVRDDMLRRGLKPRQNFRELEKGEYKSTS 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Spst2g02726 901 Gene3D Tetratricopeptide repeat domain 660 739 IPR011990 GO:0005515
Spst2g02726 901 Gene3D Tetratricopeptide repeat domain 356 426 IPR011990 GO:0005515
Spst2g02726 901 NCBIfam pentatricopeptide repeat 504 538 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 714 747 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 259 292 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 294 327 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 783 817 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 470 503 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 574 608 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 539 573 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 853 885 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 399 429 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 818 851 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 610 642 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 434 467 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 679 713 IPR002885 -
Spst2g02726 901 NCBIfam pentatricopeptide repeat 365 397 IPR002885 -
Spst2g02726 901 SUPERFAMILY HCP-like 304 542 - -
Spst2g02726 901 Gene3D Tetratricopeptide repeat domain 72 242 IPR011990 GO:0005515
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 816 850 IPR002885 -
Spst2g02726 901 Pfam PPR repeat 333 359 IPR002885 -
Spst2g02726 901 Pfam PPR repeat 749 776 IPR002885 -
Spst2g02726 901 Pfam PPR repeat 435 464 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 712 746 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Spst2g02726 901 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 91 464 - -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Spst2g02726 901 Gene3D Tetratricopeptide repeat domain 427 517 IPR011990 GO:0005515
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 677 711 IPR002885 -
Spst2g02726 901 Pfam PPR repeat 846 878 IPR002885 -
Spst2g02726 901 Gene3D Tetratricopeptide repeat domain 740 899 IPR011990 GO:0005515
Spst2g02726 901 Gene3D Tetratricopeptide repeat domain 243 355 IPR011990 GO:0005515
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 781 815 IPR002885 -
Spst2g02726 901 Gene3D Tetratricopeptide repeat domain 518 659 IPR011990 GO:0005515
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Spst2g02726 901 Pfam PPR repeat family 676 725 IPR002885 -
Spst2g02726 901 Pfam PPR repeat family 361 410 IPR002885 -
Spst2g02726 901 Pfam PPR repeat family 607 652 IPR002885 -
Spst2g02726 901 Pfam PPR repeat family 781 829 IPR002885 -
Spst2g02726 901 Pfam PPR repeat family 536 585 IPR002885 -
Spst2g02726 901 Pfam PPR repeat family 470 515 IPR002885 -
Spst2g02726 901 Pfam PPR repeat family 257 305 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Spst2g02726 901 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 851 885 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g02726 404 899 Glycosyltransferase AT1G05670 29.921 6.07e-71 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g02726 - - gmx:100797093 1576.22